Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00185 ATGTATCGAAAATCCTCTCCTTACAAACCGTCTTCTCATCTCATCTCGAGACTCCGGAAGTACGAAGATCGCCACCGGCTTTGCGGACCACACTCCGAGTTCTTCAACGAGAGTCTAAAATTGCTCGGAGGCGACAAGAATTTCACTTCTTCGCCGTGCAAGTACGTAATCTTGATGACCCGGGACGGGCTGGGAAATAGAATGCTTGCGATCGCGTCGGCGTTTCTCTACACGTTGATCACGGATCGAGTGGTGCTGATTAACCGAGTGGATGTGTTGGACGATCTTTTCTGCGAGCCGTTCGGGGAGAGATCGTGGTTGTTGCCGGAGAATTTTCCGATGAGGGATCAATTCAGGTTCTTTAAGAACTCACTGGGCAACATTTTGAGGGACAATATTCATATCGAACCAAGTGCATTGCCATCATATTTATCTCTCTATCTGTCTCATAATGCCAACAATTATGACAAGCTATTTTACTGCGAGAAACACCAAGCTCTTATCCAAAACGTTCCATGGCTGATAATGGAGACCAACAACTACATAATTCCAGGTCTTTTCCTCATACCCTCTTTTGAAAAACAGTTTTCTAAATTGTTTCCCAGAAAGGATACTGTTTTTCATCAATTGGGTAGATACCTTTTCCACCCTACAAATGATGTATGGGGACTAATCAGTAGATACAACGATGCATACCTGTCGAAAGCGAAGGAGAAACTCGGCATCCAAATCCGGGTTTTCAAATCCGAATCCGGGTCTTTCCAACACCATATGGATCAGATTCTGGCCTGCACTCGATTGGGGAATCTCCTCCCGGAGCTAAACACGACGAGGCAGCAGGCGATTCTCCGGCCGAAGACTCGGAAAACGAAGGCGGTTTTGATAACGTCGTTGAGCTCAATGTACCTGGAGAATGCGAAGAAGCTGTACTGGGAATACCCAACTGAAAATGGCGATGTAATTGGGGTTTACCAGCCTAGCCATGAGAGGCGTCTTCTAAATTTTGTGGAGAAGGCTCTCGTGGAAGATCTAATCCCAATATTGGTAGCTGCCTTCCATTGCCAACTGAACCCACTTCTCTCACAGTGCATCCAAAGAGTGGCAAGGTCAGATCTGGATAGTGTCTCTCTAGATAAAGAGCTTCCTTACGAAGTCTCAAGCGAAATCAAAGAACTACGGCTCAAATCCGAGCAGGACACCATATCTTTTATCGACGAAGATGTAGATCCAATACGCGAAAAGGGCATTAGGAATATCCACAAGGCCCTGGATGCCGACGATGTTGAACTAGTCGAGTTACTTCTGAGCGAATCCACCGTCACCTTAAACGATGCTTTTGCTCTCCATTATGCCACTGCATATTGTGATCCTAAGGTCGTTAAGAAGATGCTAAATCTAAAATTGGCCGATCTCAACCTCAGAAACAAAAGGGGTTATACGATACTTCACATGGCTGCAAGACGGAAGGACCTGGAAGTTATATTGGCTCTTTTTGACCATGGAGCATCTGCATTACAATCTACGAGAGATGGACAAACTGCCGTTTCTATCTGCCGTAGGCTAACTCGGCCGAAGGACTATAACAAGACTGCAAAACAAGGGGAGGAATCTAACAAAGATAAGTTATGCGTCGATGTGTTAGAAAGAGAGATGCGAAGGAACTCGATTTCGGGTAAGGTGTTGATGATATCACAAGAGTTGCCTGGTGATATGGATGTATTGCTCAAGTACCTGGAAGATAGAGTGGGGCTGGCGTTGAGACTTTTTCCGGCGGAGGCGAAGACGGCAATGGCAAATGCAGATGCAGATTTGACAGCGTATTCTGACCGTTATACACAGCAAAAGGTTGATCTAAACGAAAGCCCTGCAGGAAGGGCTATAAGACTCCAGAAAAGAATGCAACACCTGTTAAGAACTGTGGAGACAGGAAGACGGTATTTTCCCAGTTGCTCGGAAGTGCTCGACAATTTGTTGGACGATATGCCAAACGAGCTTTATCTCGAAGAGGGAACTTCAGAAGAGCGAGAAAGGAAGAAGCAAAGGTTCATGGAACTCAAAGATGAAGTGAATAGGGCGTTCTTCAAGGACATTTCGAAGCAGTCTGGCCTGTCACCGTCCTCGTCGTCCTCGTCTTCCCCGAAGAACAAAATACGAAACAAGGTAAGGAAACGATGA 2175 45.89 MYRKSSPYKPSSHLISRLRKYEDRHRLCGPHSEFFNESLKLLGGDKNFTSSPCKYVILMTRDGLGNRMLAIASAFLYTLITDRVVLINRVDVLDDLFCEPFGERSWLLPENFPMRDQFRFFKNSLGNILRDNIHIEPSALPSYLSLYLSHNANNYDKLFYCEKHQALIQNVPWLIMETNNYIIPGLFLIPSFEKQFSKLFPRKDTVFHQLGRYLFHPTNDVWGLISRYNDAYLSKAKEKLGIQIRVFKSESGSFQHHMDQILACTRLGNLLPELNTTRQQAILRPKTRKTKAVLITSLSSMYLENAKKLYWEYPTENGDVIGVYQPSHERRLLNFVEKALVEDLIPILVAAFHCQLNPLLSQCIQRVARSDLDSVSLDKELPYEVSSEIKELRLKSEQDTISFIDEDVDPIREKGIRNIHKALDADDVELVELLLSESTVTLNDAFALHYATAYCDPKVVKKMLNLKLADLNLRNKRGYTILHMAARRKDLEVILALFDHGASALQSTRDGQTAVSICRRLTRPKDYNKTAKQGEESNKDKLCVDVLEREMRRNSISGKVLMISQELPGDMDVLLKYLEDRVGLALRLFPAEAKTAMANADADLTAYSDRYTQQKVDLNESPAGRAIRLQKRMQHLLRTVETGRRYFPSCSEVLDNLLDDMPNELYLEEGTSEERERKKQRFMELKDEVNRAFFKDISKQSGLSPSSSSSSSPKNKIRNKVRKR 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2400740 2407495 - Bma010597.1 Bma14g00185 94166

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00185 724 Pfam Domain of unknown function (DUF3420) 371 420 IPR024228 -
Bma14g00185 724 PANTHER REGULATORY PROTEIN NPR3 329 723 IPR044292 GO:0009862|GO:2000022|GO:2000031
Bma14g00185 724 Gene3D - 390 582 IPR036770 -
Bma14g00185 724 Pfam NPR1/NIM1 like defence protein C terminal 519 711 IPR021094 -
Bma14g00185 724 SUPERFAMILY Ankyrin repeat 407 521 IPR036770 -
Bma14g00185 724 MobiDBLite consensus disorder prediction 696 724 - -
Bma14g00185 724 Coils Coil 668 688 - -
Bma14g00185 724 Pfam Ankyrin repeats (many copies) 464 517 IPR002110 GO:0005515
Bma14g00185 724 ProSiteProfiles Ankyrin repeat profile. 477 509 IPR002110 GO:0005515
Bma14g00185 724 SMART ANK_2a 477 506 IPR002110 GO:0005515
Bma14g00185 724 SMART ANK_2a 443 473 IPR002110 GO:0005515
Bma14g00185 724 SMART ANK_2a 414 442 IPR002110 GO:0005515
Bma14g00185 724 ProSiteProfiles Ankyrin repeat region circular profile. 477 503 - -
Bma14g00185 724 PANTHER REGULATORY PROTEIN, PUTATIVE-RELATED 329 723 - -
Bma14g00185 724 Gene3D - 50 104 - -
Bma14g00185 724 MobiDBLite consensus disorder prediction 697 715 - -
Bma14g00185 724 Pfam Xyloglucan fucosyltransferase 1 331 IPR004938 GO:0008107|GO:0016020|GO:0042546
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00185 K14508 NPR1; regulatory protein NPR1 - zju:107416624 442.195
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g00185 Bma-Chr14:2400740 Bma14g00874 Bma-Chr14:9871538 2.14E-96 dispersed
Bma14g01656 Bma-Chr14:35160052 Bma14g00185 Bma-Chr14:2400740 8.38E-121 transposed
Bma14g00185 Bma-Chr14:2400740 Bma07g01067 Bma-Chr7:42798812 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma14g01656 . 49 536 Xyloglucan Fucosyltransferase1 AT1G14080 54.9 2.7e-156 548.9
Bma14g01656 . 69 537 Xyloglucan Fucosyltransferase1 AT1G14100 56.7 4.7e-158 554.7
Bma14g01656 . 67 540 Xyloglucan Fucosyltransferase1 AT1G14110 53.3 4.1e-140 495.0
Bma12g00448 . 1 511 Xyloglucan Fucosyltransferase1 AT1G49710 62.8 4.4e-188 654.4
Bma12g00445 . 1 521 Xyloglucan Fucosyltransferase1 AT1G49710 62.2 8.2e-187 650.2
Bma05g00514 . 1 477 Xyloglucan Fucosyltransferase1 AT1G49710 58.9 6.6e-168 587.4
Bma02g00194 . 1 403 Xyloglucan Fucosyltransferase1 AT1G71990 69.1 4.7e-161 564.3
Bma14g01656 . 1 536 Xyloglucan Fucosyltransferase1 AT2G03210 56.9 6.4e-180 627.5
Bma14g01656 . 1 534 Xyloglucan Fucosyltransferase1 AT2G03220 62.5 6.6e-198 687.2
Bma14g00185 . 2 329 Xyloglucan Fucosyltransferase1 AT2G03220 52.4 3.2e-99 359.4
Bma14g01656 . 69 536 Xyloglucan Fucosyltransferase1 AT2G15350 52.2 5.4e-146 514.6
Bma14g01656 . 69 536 Xyloglucan Fucosyltransferase1 AT2G15370 52.5 7.6e-143 504.2
Bma14g01656 . 69 536 Xyloglucan Fucosyltransferase1 AT2G15390 53.9 1.3e-150 530.0
Bma12g00445 . 1 521 Xyloglucan Fucosyltransferase1 AT3G19280 62.8 1.2e-187 652.9
Bma12g00448 . 1 511 Xyloglucan Fucosyltransferase1 AT3G19280 63.1 2.8e-187 651.7
Bma05g00514 . 1 477 Xyloglucan Fucosyltransferase1 AT3G19280 58.7 9.3e-167 583.6
Bma14g01656 . 1 536 Xyloglucan Fucosyltransferase1 AT2G03210 56.9 6.4e-180 627.5
Bma14g01656 . 1 534 Xyloglucan Fucosyltransferase1 AT2G03220 62.5 6.6e-198 687.2
Bma14g00185 . 2 329 Xyloglucan Fucosyltransferase1 AT2G03220 52.4 3.2e-99 359.4
Bma14g01656 . 1 536 Xyloglucan Fucosyltransferase1 AT2G03210 56.9 6.4e-180 627.5
Bma14g01656 . 69 536 Xyloglucan Fucosyltransferase1 AT2G15390 53.9 1.3e-150 530.0
Bma14g01656 . 69 536 Xyloglucan Fucosyltransferase1 AT2G15370 52.5 7.6e-143 504.2
Bma14g01656 . 49 536 Xyloglucan Fucosyltransferase1 AT1G14080 54.9 2.7e-156 548.9
Bma14g01656 . 69 537 Xyloglucan Fucosyltransferase1 AT1G14100 56.7 4.7e-158 554.7
Bma14g01656 . 67 540 Xyloglucan Fucosyltransferase1 AT1G14110 53.3 4.1e-140 495.0
Bma14g01656 . 69 536 Xyloglucan Fucosyltransferase1 AT2G15350 52.2 5.4e-146 514.6
Bma12g00445 . 1 521 Xyloglucan Fucosyltransferase1 AT3G19280 62.8 1.2e-187 652.9
Bma12g00448 . 1 511 Xyloglucan Fucosyltransferase1 AT3G19280 63.1 2.8e-187 651.7
Bma05g00514 . 1 477 Xyloglucan Fucosyltransferase1 AT3G19280 58.7 9.3e-167 583.6
Bma12g00448 . 1 511 Xyloglucan Fucosyltransferase1 AT1G49710 62.8 4.4e-188 654.4
Bma12g00445 . 1 521 Xyloglucan Fucosyltransferase1 AT1G49710 62.2 8.2e-187 650.2
Bma05g00514 . 1 477 Xyloglucan Fucosyltransferase1 AT1G49710 58.9 6.6e-168 587.4
Bma02g00194 . 1 403 Xyloglucan Fucosyltransferase1 AT1G71990 69.1 4.7e-161 564.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007613 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 2 2 2 2 1 1 0 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00185 Bma_Chr14 FPKM 37.892448 39.564754 22.875759 22.63003 50.374935 59.061356 47.439148 26.690594 28.038719 26.387794