Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00189 ATGAAGTTTTGCGTCCTGATTGTTTTTTTATTTTCTGAGGTAGATCTCCGCAATTCCACCGTTGAAAGAAACCAGGCAAGGTCACCTTCCGTTATTGTCATTGGTGGTGGCATTGCTGGAGTGGCTGCAGCTCACGCTCTTCACGATGCCTCTTTTCAAGTTATCTTACTGGAGTCAAGAGAAAGACTTGGCGGTCGAATCCATACTAATCACTCATTTGGTTTTCCTGTTGATCTAGGCGCTTCATGGTTGCATGGGGTATCCAAAGAAAATCCTTTGGCACCATTGATTGGTAGACTTGGACTACCTCTATATCGTACTAGCGGGGATAACTCTGTATTATACGACCATGATTTAGAAAGTTTTGCACTCTTTGATATGGAAGGGAATCAAGTTCCTCAAGAGCTGGTGACAGAAGTTGGCGAAGCATTTGAGACCTTTTTAAAAGAGGCTAGTTATCTCCTCATTTATTGGCCAGAAGAATATGTAGAGGACATGTCCATACACCGTGCTTTCTATTTAGTTTTAGAAAGGAGGCCAGACTTAAGGCTAGAGGGCCTTGGTCATAAGGTTCTTCAGTGGTACCTATGCAGAATGGAAGGATGGTTTGCTGCAGATGCTGATACCATCTCCCTCAAATCTTGGGACCAGTGCCAGACTTTTATTTTTTTGTTGTCTTCTCAGGAAGAGCTGCTGCCTGGTGGTCATGGGCTCATGGTTAGGGGTTATCTTCCCGTTATCAACACACTTGCTAAGGGTCTTGACATACGTTTGGGGCATAGGGTGACAAAAATTTTGAGACGCAATAATGGAGTGAAGGTGACTGTAGAGGATGGCAGAAAATTTGTTGCTGATGCTGCTATTGTTACTGTTCCTCTTGGGGTACTGAAAGCAAAGAGGATAAATTTTGAGCCCAAACTTCCCGACTGGAAGGAAGAAGCTATTGCTGATCTCGGATTGGGGATTGAGAATAAAATAGTGCTTCACTTTGATAAGGTGTTTTGGCCAAATGTTGAATTTCTGGGAGTAGTTGCTGACACATCATACGGGTGCAGCTACTTTCTTAATCTTCACAAGGCCACAGGGCACTCTGTTCTTGTCTATATGCCGGCTGGGCAGTTAGCCAAAGACATTGAGAAAATGTCTGATGAAGCAGCTGCCAATTTTGCCTTTATCCAACTCAAGAAGATTCTTCCAGATGCTTCTCCCTATGTTCAATATCTTGTTTCTCATTGGGGAAGAGATATTAATTCACTCGGATCCTACAGCTACGACATGGTCGGGAAATCTCATGATCTCTACGAGAGGCTAAGAATCCCAGTCGACAACTTATTCTTTATTCTCGAATGGCTTCGGAGTCAAAACTGGTGGGACTTTGGTGAAATGGACTTCTTAATGCTGATAACGGCTTATGGCAAGTTAGGGGACTTCAATCGAGCTGAGAAAATTTTAAGCTTAATGAATAAGAAGGGTTATGTGCCAAGTGTGATATCTCATACCGCTCTCATGGAAGCATATGGAAAAGGCCACAAATATAATAACGCTGAAGCAATATTTCGAAGAATGCAGTCTACAGGACCTGAACCTTCTGCAGTGACATATCAATTGATACTTAAAATATTTGTTGAGGCTGGTAAATTTAAAGAAGCTGAAGAAATTTTCAATTTCCTTCTGGATAAAGGTAAATCACCTCTAAAGCCAGACCAAAAGATGTACCATATGATGATTTATATGTATAAGAAGGCCGGGAGTTATGATAAAGCTCGAAATGTATTTTCTCTGATGGCTGAGAATGGAATTCAACGAACTACAGTTACTTTTAATAGCTTAATGTCCTTCGAAAAAAGCTACAAGGAGGTCTTCAAGATTTATGACCAGATGCAAAGAACTGGTCTCCAACCTGACGTGGTGAGCTATGCCTTACTCATTAGTGCTTATGGAAAAGCGAGAAGGGAAGAGGAAGCATTGGCTGTTTTTGAGGATATGCTAGATGCTGGTGTCAGGCCTACTCATAAAGCTTACAATATTTTGCTGGATGCATTTGCAATATCTGGAATGGTGGAGCAAGCTCAAACTGTGTTCAAGAGTATGAGAAGAGATAGATTCTCGCCAGATCTTTACTCCTATTCAACCATGCTATCAGCTTACGTGAATGTGCCTGACATGGAAGGAGCTGAGAAGTTCTTCACGAGATTGAAAAGGGACGGATTCAAACCAAATGTTGTCATTTACGGTACACTGATAAAAGGGTATGCTAAAATAAATAATCTAGAGAAGATGATTGAAAAATATGAAGAAATGCGATCGAACGGCATTAAACCAAATGTAACCATTTTGACCACAATCATGGATGCTCATGGCAAGAACAAGGATTTTGACAGCGCAGTTGTTTGGTACAAGGAAATGGAATATTCCGGCGCTTCTCCCGATCAAAAAGCGAAGAATATTTTGTTATCGTTGGCAAAAACCACCGAAGAGAAAGAGGAAGCTAAACAACTCACCGGACAGATAGATCAATTGATCATTAAAGAAAGAACTGATGTGGCTGTGGGGTCGGTTGTCAAAGACGAAGAAGGGGATGACAGCGAGGATGAAGAAGGGGACGGAGATGATGTGGATTTGCATGATCATCAAAGAGAAGAGGAAAAAATGTTGAATGGTAATCAACAACAAAATTTTGTGTTGCATACTACTTGTCTTGGTGTATAA 2709 41.38 MKFCVLIVFLFSEVDLRNSTVERNQARSPSVIVIGGGIAGVAAAHALHDASFQVILLESRERLGGRIHTNHSFGFPVDLGASWLHGVSKENPLAPLIGRLGLPLYRTSGDNSVLYDHDLESFALFDMEGNQVPQELVTEVGEAFETFLKEASYLLIYWPEEYVEDMSIHRAFYLVLERRPDLRLEGLGHKVLQWYLCRMEGWFAADADTISLKSWDQCQTFIFLLSSQEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKILRRNNGVKVTVEDGRKFVADAAIVTVPLGVLKAKRINFEPKLPDWKEEAIADLGLGIENKIVLHFDKVFWPNVEFLGVVADTSYGCSYFLNLHKATGHSVLVYMPAGQLAKDIEKMSDEAAANFAFIQLKKILPDASPYVQYLVSHWGRDINSLGSYSYDMVGKSHDLYERLRIPVDNLFFILEWLRSQNWWDFGEMDFLMLITAYGKLGDFNRAEKILSLMNKKGYVPSVISHTALMEAYGKGHKYNNAEAIFRRMQSTGPEPSAVTYQLILKIFVEAGKFKEAEEIFNFLLDKGKSPLKPDQKMYHMMIYMYKKAGSYDKARNVFSLMAENGIQRTTVTFNSLMSFEKSYKEVFKIYDQMQRTGLQPDVVSYALLISAYGKARREEEALAVFEDMLDAGVRPTHKAYNILLDAFAISGMVEQAQTVFKSMRRDRFSPDLYSYSTMLSAYVNVPDMEGAEKFFTRLKRDGFKPNVVIYGTLIKGYAKINNLEKMIEKYEEMRSNGIKPNVTILTTIMDAHGKNKDFDSAVVWYKEMEYSGASPDQKAKNILLSLAKTTEEKEEAKQLTGQIDQLIIKERTDVAVGSVVKDEEGDDSEDEEGDGDDVDLHDHQREEEKMLNGNQQQNFVLHTTCLGV 902
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2426906 2440385 + Bma010601.1 Bma14g00189 94170

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00189 902 MobiDBLite consensus disorder prediction 857 871 - -
Bma14g00189 902 SUPERFAMILY HCP-like 471 801 - -
Bma14g00189 902 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 705 739 IPR002885 -
Bma14g00189 902 MobiDBLite consensus disorder prediction 851 890 - -
Bma14g00189 902 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 530 564 IPR002885 -
Bma14g00189 902 Pfam Pentatricopeptide repeat domain 494 542 IPR002885 -
Bma14g00189 902 Pfam Pentatricopeptide repeat domain 565 612 IPR002885 -
Bma14g00189 902 Pfam Pentatricopeptide repeat domain 622 681 IPR002885 -
Bma14g00189 902 Pfam Pentatricopeptide repeat domain 693 751 IPR002885 -
Bma14g00189 902 Gene3D Tetratricopeptide repeat domain 449 614 IPR011990 GO:0005515
Bma14g00189 902 TIGRFAM PPR: pentatricopeptide repeat domain 673 705 IPR002885 -
Bma14g00189 902 TIGRFAM PPR: pentatricopeptide repeat domain 707 741 IPR002885 -
Bma14g00189 902 TIGRFAM PPR: pentatricopeptide repeat domain 466 496 IPR002885 -
Bma14g00189 902 TIGRFAM PPR: pentatricopeptide repeat domain 637 670 IPR002885 -
Bma14g00189 902 TIGRFAM PPR: pentatricopeptide repeat domain 497 530 IPR002885 -
Bma14g00189 902 TIGRFAM PPR: pentatricopeptide repeat domain 571 602 IPR002885 -
Bma14g00189 902 TIGRFAM PPR: pentatricopeptide repeat domain 742 776 IPR002885 -
Bma14g00189 902 TIGRFAM PPR: pentatricopeptide repeat domain 780 810 IPR002885 -
Bma14g00189 902 SUPERFAMILY FAD/NAD(P)-binding domain 28 446 IPR036188 -
Bma14g00189 902 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 495 529 IPR002885 -
Bma14g00189 902 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 460 494 IPR002885 -
Bma14g00189 902 PRINTS Flavin-containing amine oxidase signature 323 342 IPR001613 GO:0016491
Bma14g00189 902 PRINTS Flavin-containing amine oxidase signature 424 446 IPR001613 GO:0016491
Bma14g00189 902 PRINTS Flavin-containing amine oxidase signature 30 49 IPR001613 GO:0016491
Bma14g00189 902 SUPERFAMILY FAD-linked reductases, C-terminal domain 319 424 - -
Bma14g00189 902 Gene3D Tetratricopeptide repeat domain 721 840 IPR011990 GO:0005515
Bma14g00189 902 Gene3D Tetratricopeptide repeat domain 615 720 IPR011990 GO:0005515
Bma14g00189 902 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 740 774 IPR002885 -
Bma14g00189 902 Pfam Flavin containing amine oxidoreductase 38 447 IPR002937 GO:0016491
Bma14g00189 902 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 568 602 IPR002885 -
Bma14g00189 902 Gene3D - 110 430 - -
Bma14g00189 902 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 670 704 IPR002885 -
Bma14g00189 902 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 775 809 IPR002885 -
Bma14g00189 902 PANTHER OS08G0191900 PROTEIN 447 888 - -
Bma14g00189 902 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 635 669 IPR002885 -
Bma14g00189 902 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 447 888 - -
Bma14g00189 902 Pfam PPR repeat 780 806 IPR002885 -
Bma14g00189 902 Pfam PPR repeat 466 491 IPR002885 -
Bma14g00189 902 Gene3D - 31 446 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00189 K17839 PAO4, PAO3, PAO2; polyamine oxidase [EC:1.5.3.17 1.5.3.-] - rcu:8273410 682.174
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g01198 Bma14g00189 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00572 Bma-Chr2:12185996 Bma14g00189 Bma-Chr14:2426906 0 dispersed
Bma07g01198 Bma-Chr7:46780025 Bma14g00189 Bma-Chr14:2426906 1.04E-31 dispersed
Bma14g00189 Bma-Chr14:2426906 Bma04g00234 Bma-Chr4:2013905 8.29E-52 dispersed
Bma02g00191 Bma-Chr2:1754655 Bma14g00189 Bma-Chr14:2426906 2.00E-07 transposed
Bma14g00189 Bma-Chr14:2426906 Bma07g01073 Bma-Chr7:43207318 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g282 . Blo03g01530 . Bda09g00486 . . . . . . . . Car01g01002 . . Cpe06g00714 Cpe02g00722 Bhi09g02001 . . . Hepe01g1358 Mch11g1108 . Cla11g01798 Cam11g1864 Cec11g1888 Cco11g1894 Clacu11g2027 Cmu11g1833 Cre11g2239 . Cone9ag0142 . . Lsi04g01286 . . . . . . . . . Bma07g01198 Bma14g00189 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0034385 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00189 Bma_Chr14 FPKM 13.119918 13.888524 9.519676 10.279378 3.805652 3.360854 4.366976 11.772861 10.340988 11.425032