Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00239 ATGGAGGGATCATCTAATTCACATTGGCAGAAGTCTGAAAGTAATAGACGTTTTAATTCTCGTTCCAACGCGTTCGAGTTATCTCGTGATTCTAGGCCTGGAAAAGTGAGAGAAAGGGTTGGAATTGCTGCCCATGCTAATGTTTTTAGGCAAAGCCATGAAGGATTTTCTGAGGGTTTTGAAGAGGGCGAACAATCAAATGATCCTTCCATTGGTTCGACCGAAAAGGGTGATGTTAGCTTGAGACATTGGTTGGATAAACCCAACAGATCAGTTGATGCTTTTGAATGTCTTCATATATTTAGGCAAATTGTGGAGATAGTTTATGCGGCTCATTCTCAAGGAATTGTTCTTCTCAACTCTCGTCCTTCGAGCTTTGTGATGCCGTCTTTCAATCGTGTATCCTTCATTGAATTGGCATCTTGTTCAGATTCTGGGTCTGATTCTATGGAGGATAGATTAACTGACCAAACGATGGAGGTTAATAATTTGTCTCCTCCGCCAAAGAATCTAGCAAGTAAAGAGTTTCAGCTTCCATTTCTCCCAATTAATAGTTTATTAGCAAATTCTTCTGTGGAGTCGAGCTCCCTCCATGTAGTCCGAGAATCGTTGATAGAAGAGGCTGGAAAACCAAAAGATAAAGACATTAAAAATGTGAATTTGGCAGAAGAAGGGAAAGCATCCTTTCCAAATAAGCAAATTTTGGTATTGGAGAGTAGATGGTACACTAGTCCTGAAGAGACTTCTGGCTCCTCAAGTTCTTGTTCTTCTGATATCTACGGTCTGGGAGTCCTTCTCTTTGAGTTATTCTGTCCCTTCTCTTCGCGGGAGGAAAAAATTAGAACTATGTCTAGTCTGAGACATCGAGTTTTTCCACCTCAATTACTGATGAAGTGGCCCAAAGAAGCTTCATTTTGCCTATGGCTGCTGCACCCTGAACCAAGCTGTCGACCAAAATTAAGTGAATTGTTACAGAGCAAATTCCTTAATGAATGGCGAAATGATTTTCAAGAGCGAGAAGCAGCACTAAAGCTTGAAGAGAGAGTAGAGCAGCAGGAGTTGTTGCTAGAATTTCTTTTGCTCATACAACAAAGGAAGCAAGAAGCCGCCCATAAGTTGCATGATACCATCTCTCTACTGTATTCAGATATCGAAGATGTATTGAAGCAGCTAAAGATTCGTGACAAGAACAATGATTCCTGTGTCGAGCTCGATATCGAAAGTAACGATATATCTGATTCGGGGGCCAGGAAAAGGTTTAAATCAAAAGTTCAAATCCAACAAGATGAAGCATGCAATGAAAATCTCGATGGTAAAGATAAGTCAGAAATAATTGATGAGAGTGAAGGAAAAATTCGTTTGAGACATTCCCGCTTGAGGAATAGTTTTAAGAAAATAGAGTCGGTATATTTGTTAATGCGAAGTAGACAAATAAATCAATCGAGAAGACAGTTGAATGGACCTTCACAACCAATAAGCAGTGATGGAAGAGGATCATCCATGGTCGTGAATGAAAGAAGCTCGGGAAGCATTTCAGCTCCAAAAGTGTTGTCTTATGGTAGGCAAGGCGGGTGGATTAATGGGTTCCTCGACGGCTTGTGCAAATATCTATCATTTAGTAAGTTAGATGTTAAGGCCGATTTGAAGCAAGGAGATCTCTTAAATTCTTTCAGTCTAGTGTCTACCCTTACCTTTGATCGCGATGGAGATTTTTTCGCTACTGCTGGCGTAAATAAGAAAATAAAAGTATTTGAATATGAAGGGGTCGTGTCCGAAGATCGTGATATCAATTATCCTGTCGCCGAAATGGTTAGTCGAGCGAAGCTGAGCAGTATTTGTTGGAATAGCTACATCAAGTGTCAAATTGCTTCAAGCAATTTTGATGGTATCGTGCAGGTCTGGGATGTTACAAGAAGTCAAGTATTAATCGAAATGCGAGAACATGAAAAACGTGTGTGGTCTGTCGACTTCTCGTCGGCAGATCCAACCATTTTGGCCAGTGGAGGGGACGACTTGTCTGTGAAGTTGTGGATTTTGCTATCACTGGATTTCTATTTTCAGGCAAAGAGTATTGGTACAATTAAAACAAAGGCCAATGTCTGTTGTGTTCAATTTCCCTCGGATTCGAGTCGCACCCTATCGTTTGGTTCGGCAGATCATAAAATATATTATTACGATCTCAGAAATCCGAAACTCCCTCTCTGCACGTTTGTTGGGCACAATAAAACAGTGAGTTACGTCAAATTCATCGACTCTGTGACTCTTGTTTCGGCTTCGACCGATAATACTTTACGGCTCTGGGATTTGTCCACGTGCGCATCTCGCATTGTTGACACTCCCATACAATCATACACTGGTCATTTGAATGTGAAGAATTTTGTCGGATTATCGGTCTCCAATGGTTTCATTGCTACTGGTTCAGAGACGAATGAGATTTACGTCTATCACAAAGCATTTCCGATGCCGGTCTTGTCATACAAGTTTAACACAGACCAACTTTCCAACCACGACATCAACGATGCTGCACAGTTTGTTTCTGCCGTTTGTTGGCGTGGCAACTCATCAACGCTAATCGCCGCAAATTCCACCGGGAACATCAAAGTCCTGAAGATGGTCTGA 2619 41.35 MEGSSNSHWQKSESNRRFNSRSNAFELSRDSRPGKVRERVGIAAHANVFRQSHEGFSEGFEEGEQSNDPSIGSTEKGDVSLRHWLDKPNRSVDAFECLHIFRQIVEIVYAAHSQGIVLLNSRPSSFVMPSFNRVSFIELASCSDSGSDSMEDRLTDQTMEVNNLSPPPKNLASKEFQLPFLPINSLLANSSVESSSLHVVRESLIEEAGKPKDKDIKNVNLAEEGKASFPNKQILVLESRWYTSPEETSGSSSSCSSDIYGLGVLLFELFCPFSSREEKIRTMSSLRHRVFPPQLLMKWPKEASFCLWLLHPEPSCRPKLSELLQSKFLNEWRNDFQEREAALKLEERVEQQELLLEFLLLIQQRKQEAAHKLHDTISLLYSDIEDVLKQLKIRDKNNDSCVELDIESNDISDSGARKRFKSKVQIQQDEACNENLDGKDKSEIIDESEGKIRLRHSRLRNSFKKIESVYLLMRSRQINQSRRQLNGPSQPISSDGRGSSMVVNERSSGSISAPKVLSYGRQGGWINGFLDGLCKYLSFSKLDVKADLKQGDLLNSFSLVSTLTFDRDGDFFATAGVNKKIKVFEYEGVVSEDRDINYPVAEMVSRAKLSSICWNSYIKCQIASSNFDGIVQVWDVTRSQVLIEMREHEKRVWSVDFSSADPTILASGGDDLSVKLWILLSLDFYFQAKSIGTIKTKANVCCVQFPSDSSRTLSFGSADHKIYYYDLRNPKLPLCTFVGHNKTVSYVKFIDSVTLVSASTDNTLRLWDLSTCASRIVDTPIQSYTGHLNVKNFVGLSVSNGFIATGSETNEIYVYHKAFPMPVLSYKFNTDQLSNHDINDAAQFVSAVCWRGNSSTLIAANSTGNIKVLKMV 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2885522 2891136 + Bma010650.1 Bma14g00239 94220

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00239 872 Pfam WD domain, G-beta repeat 642 677 IPR001680 GO:0005515
Bma14g00239 872 Pfam WD domain, G-beta repeat 733 768 IPR001680 GO:0005515
Bma14g00239 872 ProSitePatterns Trp-Asp (WD) repeats signature. 755 769 IPR019775 -
Bma14g00239 872 PANTHER PROTEIN SPA1-RELATED 2 1 872 IPR044630 GO:0009640
Bma14g00239 872 Gene3D Transferase(Phosphotransferase) domain 1 78 341 - -
Bma14g00239 872 PANTHER PROTEIN SPA1-RELATED 3 1 872 - -
Bma14g00239 872 MobiDBLite consensus disorder prediction 57 76 - -
Bma14g00239 872 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 737 771 - -
Bma14g00239 872 SUPERFAMILY Protein kinase-like (PK-like) 75 332 IPR011009 -
Bma14g00239 872 CDD WD40 560 868 - -
Bma14g00239 872 Gene3D - 531 872 IPR015943 GO:0005515
Bma14g00239 872 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 645 677 - -
Bma14g00239 872 PRINTS G protein beta WD-40 repeat signature 755 769 IPR020472 -
Bma14g00239 872 PRINTS G protein beta WD-40 repeat signature 665 679 IPR020472 -
Bma14g00239 872 PRINTS G protein beta WD-40 repeat signature 622 636 IPR020472 -
Bma14g00239 872 ProSiteProfiles Trp-Asp (WD) repeats profile. 645 677 IPR001680 GO:0005515
Bma14g00239 872 SUPERFAMILY WD40 repeat-like 557 870 IPR036322 GO:0005515
Bma14g00239 872 ProSiteProfiles Trp-Asp (WD) repeats profile. 737 771 IPR001680 GO:0005515
Bma14g00239 872 MobiDBLite consensus disorder prediction 1 36 - -
Bma14g00239 872 MobiDBLite consensus disorder prediction 1 27 - -
Bma14g00239 872 SMART WD40_4 638 678 IPR001680 GO:0005515
Bma14g00239 872 SMART WD40_4 596 635 IPR001680 GO:0005515
Bma14g00239 872 SMART WD40_4 687 726 IPR001680 GO:0005515
Bma14g00239 872 SMART WD40_4 730 768 IPR001680 GO:0005515
Bma14g00239 872 SMART WD40_4 777 816 IPR001680 GO:0005515
Bma14g00239 872 SMART WD40_4 550 585 IPR001680 GO:0005515
Bma14g00239 872 SMART WD40_4 831 870 IPR001680 GO:0005515
Bma14g00239 872 MobiDBLite consensus disorder prediction 480 504 - -
Bma14g00239 872 ProSiteProfiles Protein kinase domain profile. 1 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma14g00239 872 SMART serkin_6 25 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00239 - - - qsu:111982906 1018.07
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma13g00954 Bma14g00239 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00954 Bma-Chr13:40684466 Bma14g00239 Bma-Chr14:2885522 0 dispersed
Bma14g00239 Bma-Chr14:2885522 Bma14g00626 Bma-Chr14:6752897 4.12E-155 dispersed
Bma14g00239 Bma-Chr14:2885522 Bma15g00557 Bma-Chr15:6406443 1.38E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g218 . . . Bda09g00507 . . . Bma13g00954 . . . Cma09g00865 . . . Cpe06g00688 Cpe02g00702 Bhi09g03428 Tan01g4394 . . . Mch11g1069 . Cla11g01762 Cam11g1829 Cec11g1849 Cco11g1856 Clacu11g1989 Cmu11g1798 Cre11g2206 . . . . . Csa04g02344 Chy07g00076 . . . . . Bpe11g00483 . . Bma14g00239 . . Cmo09g00854 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003437 3 3 1 2 3 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 2 4 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00239 Bma_Chr14 FPKM 8.013947 11.886567 9.832459 11.056768 3.802507 4.063702 3.700483 9.372169 9.894702 9.198528