Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00253 ATGGCGCCGAGAGATGGATCCGCCGCGTCGGACCCGAACTCTAGTACGGCCTCTAGGGAAATTAGATATCGAGGCGTGAGGAAGAGGCCATGGGGAAGGTACGCGGCGGAGATTCGCGACCCTGGAAAGAAGACGCGGGTTTGGCTGGGGACCTTCGATACTGCGGAAGAGGCGGCGCGTGCTTACGATACTGCCGCGCGTGAGTTTCGTGGGGCGAAAGCTAAAACTAATTTCCCTACTCCGGTGGATCTCTTTGGGGTGGATGGAAATCATAACTTCACACGCAGCAGTCCCAGTCAGACCAGCACCGTCGAGTCGTCTTCTCCTCCGCCGCCGTTGGACCTCACTCTCACTCCCGTTTCCATCGCTGCTGGTCGTTTCGCCGGGAGTTGCTATCCTCCCGGAGGTTTACAAGCGGTAACGATGGGCCGTCCGCTCTACTTCGATGCTTTCGCACGTTCAGAGAAAACGAGAGTGACCCACCGGGAAATGCAAAAGTTTTATACTACGATGGTTTCTGATTTCCGGCCGGTCATGGCTGGCGGGGCACAGAGCGACTCCGGTTCGTCGTCGGTGGTCGATTTCAATCAAACCCAAAACATCGGACGATTAGATCTCGATCTTAACCAGCCTCCTCCACCCGAGGTCGCCTAA 654 56.73 MAPRDGSAASDPNSSTASREIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGAKAKTNFPTPVDLFGVDGNHNFTRSSPSQTSTVESSSPPPPLDLTLTPVSIAAGRFAGSCYPPGGLQAVTMGRPLYFDAFARSEKTRVTHREMQKFYTTMVSDFRPVMAGGAQSDSGSSSVVDFNQTQNIGRLDLDLNQPPPPEVA 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3005869 3006522 + Bma010666.1 Bma14g00253 94234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00253 217 MobiDBLite consensus disorder prediction 93 112 - -
Bma14g00253 217 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Bma14g00253 217 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Bma14g00253 217 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Bma14g00253 217 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 205 - -
Bma14g00253 217 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Bma14g00253 217 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Bma14g00253 217 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Bma14g00253 217 MobiDBLite consensus disorder prediction 93 111 - -
Bma14g00253 217 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Bma14g00253 217 PANTHER ERF FAMILY PROTEIN 1 205 - -
Bma14g00253 217 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Bma14g00253 217 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00984 Bma-Chr10:22574711 Bma14g00253 Bma-Chr14:3005869 2.60E-25 dispersed
Bma11g00414 Bma-Chr11:4454815 Bma14g00253 Bma-Chr14:3005869 1.16E-44 dispersed
Bma13g01075 Bma-Chr13:43608302 Bma14g00253 Bma-Chr14:3005869 1.82E-30 dispersed
Bma15g00218 Bma-Chr15:2163371 Bma14g00253 Bma-Chr14:3005869 3.35E-27 dispersed
Bma14g00253 Bma-Chr14:3005869 Bma08g00565 Bma-Chr8:33833522 2.73E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58301 PF00847 AP2 8.50E-15 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00253 K09286 - zju:107432496 207.608