Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00255 ATGGCTGATGCTGTGATGATCTCTGAGGCTGTGGGATCAAGGTTTAGTTCGTTGGAGCTCATTGGGAGGGGATCATTTGGAGACGTCTATAAGGGGTTTGATGAGGAGCTCAACAAAGAAGTTGCTATAAAAGTTATTGATTTAGAAGAATCAGAAGATGAAATTGAGGATATTCAGAAGGAAATTTCTGTATTATCACAATGTCGATCTTCTTATATCACAGAGTATTACGGTTCTTATCTTAACCAGACTAAATTATGGATAATAATGGAATACATGGCTGGCGGCTCTGTTGCAGACTTGCTTCAATCAGGTCCACCTTTGGATGAAATGGCGATTGGTTGCATTCTACGTGACTTGCTGCATGCAGTTGACTATTTACACAATGAAGGAAAAATCCACCGGGATATCAAAGCGGCAAACATTTTGTTGACCGAGAATGGTGATGTGAAGGTTGCAGATTTTGGTGTTTCTGCGCAATTAACTAGGACAATTTCAAGAAGAAAGACATTTGTAGGAACACCCTTTTGGATGGCACCAGAAGTAATTCAAAATTCAGAAGGATATAACGAAAAGGCGGATATCTGGTCTCTTGGAATCACTGCTATTGAGATGGCAAAAGGGGAGCCTCCTCTTGCGGATCTTCATCCAATGAGAGTTCTTTTTATCATACCTCGGGAGAATCCACCTCAGTTGGATGAGCATTTTTCTCGTCCAATGAAAGAATTTGTATCACTGTGTCTGAAGAAAGTACCAGCTGAGAGGCCAAGTGCCAAGGAGCTTCTAAAGCATCGATTTATTAGAAATGCGAGGAAGAGTCCAAGGCTTCTAGAAAGAATTAGAGAGCGTCCAAAGTATCAAATAAAGGAGGATGTTGAAACGACTAGAAATGGTCCTAGAGATATGGGGGAGTTGTCTGACACAGTCAAGGCGCCAAGAAGTTTACTAAGAGAAGAAAATGCGCATATTAGTAATCAGGGTAAAACCACAAAAAATGCTGGATGGGATTTTAGCATTGGTGGCTCACATGGAACAGGTACAGTTCGAAGTATAGTTAAACCACCTCAATTTGGAGAAAAGAAACCTGAAGTTCCACTCTCTGGTGGAAACCTACGGTTTGCTGCCTATGGAAATGCACTTCGTGATGCCCCTGAAGGATTTTTTACAAAGGATGCTCGAGATTTATACCATGATAAACGTCGGGAAGATGAAGAGTTATCAGTAAGTGGATCTGGAACTGTTGTGATTCGATCTCCCCGAGGATCTCAGTCGACCGAATTCTTTAATCAAAGCAGTCTGTCAGGGAGCACTTATGCATTGTTGGAAGATACTTCATCTAGTGGAACTGTAGTTATTCGCGGGCAACATGATGATACAGATTCTCCCCGAACTCCAAAGTCCAGACTTGGCCTTCAGGATAGGACTTCCACAGCCTCATTTGAAGACAGTGAATTAAACCTTTCAGAGGCAAAGGCTGCAATTCAAGCAGGGTTAAAGAAATCAAATGCTAGAGAAAGGTCTGCGCTTGGAAAAATTAATAATGATGGGAAGGAGAATCGAAGAAGAGGGGAAATAACCAGTAGCGTTGATTCTTCCAGAGATTCTAATGAATACTTAGATGGGCCAAAAGCATTTTCAAGATCGCAACCAGCAACTGAGACTGAAGAAAGTGCAAAAGTATTATCATCTTCTTCACCGTTATCTATTTTGCTCATCCCATCTTTGAAGGAGATTTGTGTTGAGACCATATTCTCGGATGGGCTTGACATACCAATGAGCATTTCACAGGCTTCTGATTCGGTCAGTCTGAAAGAGATACCACATTATGAAATTAAAATTGGCGAAGAATGCGACTGGGTTAAGATAACTCAGGAATCATTTAATCCAATTGAAATAACCAAAGGACTTTGGATAGTTCCACAATGGAGAACTCCGCCGGACGTCGAAGCGACAAACATAATTCTTAATCCTGGACTAGCATTTGGAACCGGTGAGCACCCAACGACAAAGTTGTGCATATTATTGCTAAGCAGCCTCGTCAAAGGAGGGGAACGTTTCTTGGACTATGGCACGGGTTCTGGAGTTCTTTCAATTGCAGCTCTCAAGTTTGGTGCTGCCTCATCTGTTGGAATTGACATAGATCCACTAGCCATTGCATCTGCTAAGCACAATGCTGATTTGAACAATATAGGACCGGATCACATGAAATTACAACTGATTTCTGGAAAGGAAATCGTATGGAAATATGATTTGGTTGTCGCGAATATTCTTTTGAATCCTCTCCTAGATTTGGCAGATCATATTGTCTCCTTTGCCAAGCCTGGTGGAATTGTTGGTCTTTCTGGTATTCTCTCTGAGCAGGTTCCATGTATTATAGAGCGATACTCGCAGTACTTGGAGGACATATCTGTAACGGAGATGGATGATTGGGGATGTGTTAGTGGCAAAAAGAGAATAAATGTTGGGGGTGAAGAATGA 2478 41.69 MADAVMISEAVGSRFSSLELIGRGSFGDVYKGFDEELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSSYITEYYGSYLNQTKLWIIMEYMAGGSVADLLQSGPPLDEMAIGCILRDLLHAVDYLHNEGKIHRDIKAANILLTENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKEFVSLCLKKVPAERPSAKELLKHRFIRNARKSPRLLERIRERPKYQIKEDVETTRNGPRDMGELSDTVKAPRSLLREENAHISNQGKTTKNAGWDFSIGGSHGTGTVRSIVKPPQFGEKKPEVPLSGGNLRFAAYGNALRDAPEGFFTKDARDLYHDKRREDEELSVSGSGTVVIRSPRGSQSTEFFNQSSLSGSTYALLEDTSSSGTVVIRGQHDDTDSPRTPKSRLGLQDRTSTASFEDSELNLSEAKAAIQAGLKKSNARERSALGKINNDGKENRRRGEITSSVDSSRDSNEYLDGPKAFSRSQPATETEESAKVLSSSSPLSILLIPSLKEICVETIFSDGLDIPMSISQASDSVSLKEIPHYEIKIGEECDWVKITQESFNPIEITKGLWIVPQWRTPPDVEATNIILNPGLAFGTGEHPTTKLCILLLSSLVKGGERFLDYGTGSGVLSIAALKFGAASSVGIDIDPLAIASAKHNADLNNIGPDHMKLQLISGKEIVWKYDLVVANILLNPLLDLADHIVSFAKPGGIVGLSGILSEQVPCIIERYSQYLEDISVTEMDDWGCVSGKKRINVGGEE 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3020751 3035016 - Bma010668.1 Bma14g00255 94236

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00255 825 SUPERFAMILY Protein kinase-like (PK-like) 12 306 IPR011009 -
Bma14g00255 825 Hamap Ribosomal protein L11 methyltransferase [prmA]. 522 817 IPR004498 GO:0006479|GO:0008276
Bma14g00255 825 Pfam Ribosomal protein L11 methyltransferase (PrmA) 576 817 - -
Bma14g00255 825 MobiDBLite consensus disorder prediction 402 428 - -
Bma14g00255 825 CDD STKc_MST3_like 13 287 - -
Bma14g00255 825 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Bma14g00255 825 MobiDBLite consensus disorder prediction 292 311 - -
Bma14g00255 825 MobiDBLite consensus disorder prediction 449 483 - -
Bma14g00255 825 MobiDBLite consensus disorder prediction 411 428 - -
Bma14g00255 825 Gene3D Vaccinia Virus protein VP39 626 822 IPR029063 -
Bma14g00255 825 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma14g00255 825 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma14g00255 825 MobiDBLite consensus disorder prediction 504 528 - -
Bma14g00255 825 MobiDBLite consensus disorder prediction 465 483 - -
Bma14g00255 825 MobiDBLite consensus disorder prediction 503 559 - -
Bma14g00255 825 TIGRFAM prmA: ribosomal protein L11 methyltransferase 560 810 IPR004498 GO:0006479|GO:0008276
Bma14g00255 825 Gene3D Transferase(Phosphotransferase) domain 1 12 302 - -
Bma14g00255 825 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma14g00255 825 MobiDBLite consensus disorder prediction 346 367 - -
Bma14g00255 825 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 3 578 - -
Bma14g00255 825 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 3 578 - -
Bma14g00255 825 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 607 814 IPR029063 -
Bma14g00255 825 Coils Coil 41 68 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00255 K08838 STK24_25_MST4; serine/threonine-protein kinase 24/25/MST4 [EC:2.7.11.1] - vvi:100258981 862.062
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00127 Bma-Chr1:1244103 Bma14g00255 Bma-Chr14:3020751 2.25E-73 dispersed
Bma10g00841 Bma-Chr10:15014080 Bma14g00255 Bma-Chr14:3020751 5.67E-59 dispersed
Bma14g00255 Bma-Chr14:3020751 Bma15g00785 Bma-Chr15:16763102 1.93E-56 dispersed
Bma14g00255 Bma-Chr14:3020751 Bma12g00255 Bma-Chr12:3305310 2.76E-68 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma14g00255 . 1 577 MAP Kinase Kinase Kinase Kinase AT1G53165 64.2 2.8e-190 662.1
Bma01g00127 . 223 488 MAP Kinase Kinase Kinase Kinase AT1G53165 50.9 2.3e-67 253.8
Bma14g00255 . 1 577 MAP Kinase Kinase Kinase Kinase AT3G15220 67.3 3.1e-205 711.8
Bma01g00127 . 223 488 MAP Kinase Kinase Kinase Kinase AT3G15220 50.2 6.7e-67 252.3
Bma01g00127 . 9 792 MAP Kinase Kinase Kinase Kinase AT1G69220 55.8 2.2e-218 755.7
Bma01g00975 . 1 662 MAP Kinase Kinase Kinase Kinase AT5G14720 64.0 4.2e-239 824.3
Bma12g00255 . 5 693 MAP Kinase Kinase Kinase Kinase AT4G24100 65.1 4.4e-242 834.3
Bma05g00683 . 5 662 MAP Kinase Kinase Kinase Kinase AT4G24100 66.2 1.4e-237 819.3
Bma05g00683 . 6 662 MAP Kinase Kinase Kinase Kinase AT4G10730 67.2 1.5e-239 825.9
Bma12g00255 . 6 694 MAP Kinase Kinase Kinase Kinase AT4G10730 65.4 1.1e-237 819.7
Bma10g00841 . 4 402 MAP Kinase Kinase Kinase Kinase AT1G70430 56.9 9.2e-129 457.6
Bma12g00255 . 2 401 MAP Kinase Kinase Kinase Kinase AT1G70430 54.0 1.8e-121 433.3
Bma05g00683 . 2 350 MAP Kinase Kinase Kinase Kinase AT1G70430 60.2 4.6e-120 428.7
Bma10g00841 . 1 678 MAP Kinase Kinase Kinase Kinase AT1G79640 58.7 3.1e-210 728.4
Bma01g00975 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 57.1 5.5e-100 361.7
Bma10g00841 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.1 3.8e-85 312.4
Bma05g00683 . 14 303 MAP Kinase Kinase Kinase Kinase AT1G23700 52.2 9.2e-79 291.2
Bma12g00255 . 12 303 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 5.0e-77 285.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005838 1 3 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66873 PF06325 PrmA 1.60E-73 CL0063 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00255 Bma_Chr14 FPKM 1.625668 1.397414 54.022987 52.486137 0.181964 0.0 0.0 3.476722 2.53814 1.482767