Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00272 ATGGGGTGTGCTGGATCGTCGCAGGCCAAAGGAGACGGGATTTCAAAGAAGATTCGGAAGCCAAAACCTTGGAAGCACCCTCAACTGATAACAAAGACTCAGCTTTTGCAGCTGCGCGATGAATTTTGGGACACTGCACCTCACTATGGTGGTAGGAAAGAGATTTGGGATGCACTTAGAGCTGCCGCAGAAGCTGATCTATCACTTGCACAAGCGATCGTAGAAAGTGCAGGAGTTATTATTCAAAGTGCTGATATGACAATATGTTATGATGAGAGAGGTGCAAAATATGAACTACCCAATTATGTTCTAAGCGAGCCGACCAACTTGATT 333 45.35 MGCAGSSQAKGDGISKKIRKPKPWKHPQLITKTQLLQLRDEFWDTAPHYGGRKEIWDALRAAAEADLSLAQAIVESAGVIIQSADMTICYDERGAKYELPNYVLSEPTNLI 111
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3241613 3243966 + Bma030648 Bma14g00272 94253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00272 111 MobiDBLite consensus disorder prediction 1 24 - -
Bma14g00272 111 Gene3D - 31 104 IPR038169 -
Bma14g00272 111 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 110 - -
Bma14g00272 111 PANTHER UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED 1 110 IPR039869 -
Bma14g00272 111 Pfam Ubiquitin-binding domain 15 111 IPR032752 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00272 - - - qsu:112023216 205.682
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma13g00925 Bma14g00272 CCT
Bma13g00925 Bma14g00272 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00792 Bma-Chr7:23660071 Bma14g00272 Bma-Chr14:3241613 2.34E-74 dispersed
Bma13g00925 Bma-Chr13:39686888 Bma14g00272 Bma-Chr14:3241613 1.07E-68 dispersed
Bma14g00272 Bma-Chr14:3241613 Bma07g01148 Bma-Chr7:45658383 6.45E-75 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g91 Blo03g00703 . . Bda09g00548 Bpe09g00264 Bpe08g00988 . Bma13g00925 Cmo16g00465 . . . Car01g01074 . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00727 . Bda12g00815 Bpe11g00442 . . Bma14g00272 . Cmo01g01308 . Cma04g00665 Cma16g00432 . . Cpe14g00364 Cpe01g00600 . . . . . . . . . . . . . . . Csa04g00814 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001260 3 5 3 5 4 1 3 2 1 2 2 2 3 2 2 2 2 0 3 2 2 2 2 2 2 2 2 5 3 2 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00272 Bma_Chr14 FPKM 0.0 0.0 0.792655 0.705369 0.343059 0.0 0.0 0.590115 0.623692 0.580427