Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00305 ATGTCGCATGGTGTTGTGTTGGCTGCAATGTTGACTGGATTTTTGGTATTTGGATGTAAAAAAGTTTTTGCAGTAGAAGATGTTGTCAATGCTGGCTATGGAGTATTTGGGCAGAGCATTTTGTTGCTCAGGAATGCTTGGCCCAAGATATCTCAGGTTCTACAGGTTTTCAAGGAGCAAGGTTTAATTTTAGTCGCTCTTTTAGGCCTTTCAGCATTTTTCTCCATGGCTGAGACTTCAATTACCACTCTTTGGCCTTGGAAGGTACGTGAGTTAGCTGAAAAAGAATCTGAAGATGGTGTATTCAAAATGCTTCGTAGTGATGTTACTCGGTTCCTCACCACTATTCTCATTGGCACAACTGTGGTTAATATTGGAGCAACTGCTTTAGTCACAGAGGCTGCAACTGCAATATTTGGAGAAGCTGGTGTTAGTGCAGCGACAGGAATAATGACGGTAGCCATTTTACTTCTCACCGAACTCACTCCAAAAAGTATTGCCGTGCACAATGCAACTGAAGTTGCTAGAGTTGTGGTTAGGCCAGTTGCTTGGCTTTCTGTGGTTCTATATCCTGTTGGAAGAATTGTCACATTCATATCAATGGGGATGTTAAAAATGCTTGGCTTGAAAGGGCGAAGTGAGCCATATGTAACTGAAGAGGAGCTGAAATTGATGTTGCGAGGGGCCGAATTAAGTGGAGCTATTGAGGAGGAAGAACAGGATATGATAGAGAATGTTTTAGAAATAAAAGATACTCATGTTAGGGAGGTTATGACACCGCTAGTTGATGTGGTTGCAATAGACTCAAGTTCAACTCTCGTAGACTTTCACAACTTATGGCTGACACATCAATATTCCAGGGTACCCGTATTTGAGCAGCGTGTTGACAATATTGTGGGAATTGCATATGCAATGGATTTGCTTGATTATGTCCAGAAGGGCGACCTACTAGAGAGTACAACTGTCGGGGATATGGCTCATAAACCTGCTTACTTTGTCCCTGATTCAATGTCTGTCTGGAATCTTCTTAGAGAGTTTCGTATTCGGAAAGTGCACATGGCCGTTGTTCTTAATGAGTATGGAGGCACTGTGGGATTAGTGACCTTGGAAGATGTGGTTGAGGAAATTGTCGGTGAAATCTTTGATGAAAATGATTCAAAGGAGGAAATCCAAAAAAAAACTGGCTACATTGTGATGCGAGCAGAAGGTGTATATGACGTGGATGCAAACACTTCAATTGATCAGCTCTCTGAAGATTTAAACATTAAAATGCCTGAGGGTCATCAATATGAGACGGTGTCGGGCTTCATCTGCGAAGCTTTTGGATATATCCCGAGGACTGGTGAGAGCATCAAAGTGGTTCTTGAAAAGGAAAATCAAGAAGACAACGAGGAGGCCACTCCGGACCACCAGAATCAGAAGGAAAAGCATCTGATTTTTAAGATTGAGATTCTAGCTGGAAATGCCAGAAAGGTGAGTGCAGTCCGATTCGAGAGTGTAAGTGATGACGAAGATGATGTCACTGTGCTGGAAAGCAAAGGGGTGGCTAGTTGGGTTCCCAAAATCATGAAGAGAAAATGGAGCAGTGATGAGGATTCAAGTAGTGTAGAAAATGGCGAGGATTCTTATTCACAGAAACCCAATGAAGGCGTCTTAAATGACGAGCAGAATGACTATCAGAATTCATAA 1689 42.33 MSHGVVLAAMLTGFLVFGCKKVFAVEDVVNAGYGVFGQSILLLRNAWPKISQVLQVFKEQGLILVALLGLSAFFSMAETSITTLWPWKVRELAEKESEDGVFKMLRSDVTRFLTTILIGTTVVNIGATALVTEAATAIFGEAGVSAATGIMTVAILLLTELTPKSIAVHNATEVARVVVRPVAWLSVVLYPVGRIVTFISMGMLKMLGLKGRSEPYVTEEELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDSSSTLVDFHNLWLTHQYSRVPVFEQRVDNIVGIAYAMDLLDYVQKGDLLESTTVGDMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGLVTLEDVVEEIVGEIFDENDSKEEIQKKTGYIVMRAEGVYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFICEAFGYIPRTGESIKVVLEKENQEDNEEATPDHQNQKEKHLIFKIEILAGNARKVSAVRFESVSDDEDDVTVLESKGVASWVPKIMKRKWSSDEDSSSVENGEDSYSQKPNEGVLNDEQNDYQNS 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3824824 3834847 - Bma010728.1 Bma14g00305 94286

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00305 562 Pfam Cyclin M transmembrane N-terminal domain 62 239 IPR002550 -
Bma14g00305 562 ProSiteProfiles CBS domain profile. 325 383 IPR000644 -
Bma14g00305 562 Pfam Transporter associated domain 399 499 IPR005170 -
Bma14g00305 562 PANTHER BNAC03G73630D PROTEIN 3 553 - -
Bma14g00305 562 MobiDBLite consensus disorder prediction 526 562 - -
Bma14g00305 562 MobiDBLite consensus disorder prediction 538 562 - -
Bma14g00305 562 Gene3D - 395 496 IPR016169 -
Bma14g00305 562 PANTHER HEMOLYSIN-RELATED 3 553 - -
Bma14g00305 562 Pfam CBS domain 254 312 IPR000644 -
Bma14g00305 562 Pfam CBS domain 322 377 IPR000644 -
Bma14g00305 562 Gene3D - 233 388 IPR046342 -
Bma14g00305 562 CDD CBS_pair_CorC_HlyC_assoc 253 374 IPR044751 -
Bma14g00305 562 SMART CorC_HlyC_2 398 501 IPR005170 -
Bma14g00305 562 ProSiteProfiles CBS domain profile. 258 319 IPR000644 -
Bma14g00305 562 SUPERFAMILY FAD-binding/transporter-associated domain-like 396 505 IPR036318 GO:0050660
Bma14g00305 562 SMART cbs_1 329 377 IPR000644 -
Bma14g00305 562 SMART cbs_1 263 312 IPR000644 -
Bma14g00305 562 SUPERFAMILY CBS-domain pair 241 380 IPR046342 -
Bma14g00305 562 ProSiteProfiles CNNM transmembrane domain profile. 53 239 IPR002550 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00305 - - - mnt:21392823 943.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00162 Bma-Chr9:5664458 Bma14g00305 Bma-Chr14:3824824 6.58E-09 dispersed
Bma14g00305 Bma-Chr14:3824824 Bma04g00208 Bma-Chr4:1810479 1.53E-06 dispersed
Bma14g00305 Bma-Chr14:3824824 Bma01g02320 Bma-Chr1:80712772 3.44E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g623 . . Bda07g00396 . . . . . . . Cma01g01088 . Car01g00964 . . . . . . . . . . . . . . . . . . Cone6ag0023 Cone9ag0023 . . . . . . . . . . Bpe11g00574 . . Bma14g00305 . Cmo01g01134 . . . . . . . . . . . . . . Cla09g02052 Cam09g2140 Cec09g2207 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005841 1 1 2 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 2 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00305 Bma_Chr14 FPKM 0.0 0.0 1.478365 1.083654 0.130739 0.0 0.0 0.350458 0.489272 0.201673