Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00307 TCCGTATCAATGGCGTCCAACCAGAACCTACTTGATCTCCAGTGGCTTATCCAAGCTATCGATTCTGAAAGCCTGGACCTTCAAAACCTCTCATTTTACCTCTCCCAAACCACTTCAGGCTGTTTCTTAGAGACGGAAAACTCCGTTAATGTACACATTTCTCGCGACAGCTTTCTTCTCTTCTCCAACGTACTAACAGCTTTCACGACAGGGAAAAAAGCCCTAACTTCTCTGAGAAACCTAGAGTTTCATTGCGTGAATTGGGAAATAGAACAGCTTAGAAACTTCGCCGTGCTGCTGGACAACAGCTTGGAAATTAAGCGCGTCGTTTTTCGTAGAAACGGGTTCAGTGAAGATTGTTTATCCGAGCTCTGCGAGATTTTGAAGGGGATGAAAACGGTTAAAGAGATAATGTTCTCAGAATCAGAGATTGGGTCATTCGGGGCTAGGGTTCTTGCTTCGGCTCTGAAAGTGAACGACAGTTTAGAAGAATTGCAGATCTGGGAAGACTCAATTGGGTCAAAAGGGGCCGAAGAACTTTCGAAAATGATCGAAGCAAACTCGACTTTAAAGGTTTTGACAATCTTCGATTCGAATGCAATCACTGCAACTCCATTGATTTCTGCAGTTTTAGCTAGGAATAGAACAATGGAAGTTCATATATGGAGCAAAGAAAATGGAGAAAAAGTCACAAAGATTGTGGAATTCTTGCCTGCACACAGCACACTTAGAATTTACAAGCTTAACACGGCAGGTTCTTGCAGGGTAGCTTGTGCTTTAGGATGGAATTCATCGGTTAAGTCGCTAGACATGACCGGAATCCGCCTGAAATCCCGGTGGGCTAGGGAATTCCGTTGGGTTTTGGAGCAGAATCAGAGCCTGAAGGAGTTAAACTTATCAAAAACTTGCTTAAAAAACAAAGGAGTTGTTTATGTTGCTGTTGGATTATTCAAAAACCGCCATTTGGAAAGCTTGTATTTAGAAGGAAACTGGTTTTCCGACATTGGAGTTGAGCATTTACTCTGTCCTTTCAGCAGATTCTCCACCCTGCAAATCCAAGCTAACACAACTCTCACTTCTCTGACATTTGGGGGAGGAAGAACCAAGATAGGAAGAACCGGGCTTCATGCCATTTTAGTGATGCTTCGAACTAACGAAAGCTTGATTCGACTTGGGATTTGCGAAGATCGAAGTCTAAAACCAGAAGATTTTGCCAAAATTTTCAAGAGTTTGGAGAAGAACACTAGTTTAAGACATTTATCATTGCAAGGCTGCAATGGGGTTGATGGAGATTTGGTGTTGCGGACATTGATGGAGACCTTAGAGGTCAATCCATGGCTTGAAGACATTGATCTGTCCAGAACTCCTCTGCAGAATTCTGGAAAAACCGACAAGATTCACCAGAGATTGGGCCAGAACGGAAGAACCGAACCCGAAAAGGATTTGCTCAAGGACACGCCACTTACTGAGCCGCGAAGTTGCCGAGTTTTCATCTGCGGGGAAGATTACGCAGGTAAAACTACACTATGTAACTCCATATCACAGAATTTCTCTTCTTCGAAGCTTCCATATGCGGACCAAGTTAGATCTTTAGTCAACCCAATAGAACAGTCCGTAAGAACAGTTGGAATGAAGATCAAGACCTTCAAAGATGACAGCACAAAAATTTCAGTTTGGAATCTTTCTGGGCAGCATGAGTTTTGCTCCCTCCATGATCTCATGTTTCCGGGCCATGGAAGTGCATCGATTTTCTTCATCGTTTCAAGCTTATACAGAAACAACAAAGAACCAAAAACTGCATCAGAAATCGAGGAGGACCTCCATTACTGGCTCAGATTCATTGTCTCAAACTCAAAAAGAGCAGTTCAACAGTGTATTCTTCCAAATGCGACTGTTGTTCTTACCCATTACGACAAGATCGTTCAACCATCGGAGAATTTGCAGCTAATTGTGAATTCAGTCCAAAGTTTAAGGGATAAGTTCCAAGGTTTTGTGGATTTCTACCCGACTTTATTCACAGTCGATGCAAGATCATCAGTGTCGGTAAACAAACTCACTCATCACCTTCGAAAGACGAGCAAGACTGTTCTTCAACGAGTCCCTCGAGTTTACCAGCTATGCAATGACCTCATTGAAAATTTAGCAGAATGGAGATCGGAAAACTTCAACAAGCCGGCAATGAAGTGGAAAGAGTTTGAAGAACTATGTCAAGTTAAAGTTCAACCGTTAAGAATTCGATCAAGAGGCAATCAAAAAGACAAAATGGAAACAAGGAGGAAGGCAATGGCTGTCTGCTTACACGAAATGGGAGAGGTTGTTTACTTTGATGAACTTGGAATTTTGGTATTAGACTGTGAGTGGTTCTATGGGGAAGTTCTAAGTCAGCTAACAAGATTAGAAGGTCGAAAGGGAAACTCAGCCGAGAAAAATGGATTCATCAGCCGAAAAGAATTGGAGAAGATTCTGGGAGAGAATCTACGCAGCCATATCCCTGGAATGCCGTCAAAGGTTTTCGAAAATTTGCAGGTCAGCGATCTTGTGAGGATGATGCTGAAACTTGAACTTTGTTATGAACAAGATAAATCCGATCCAAATTCTCCTTTATTGATCACCTCTCTTCTGAACGAAGGAAGAGGAAAGCCGCAAAAATGGCAGATAACCGAATTCAACTGTGTCTATGCCGGCCGACATCTGGAGTGCGATGATTCAAGCCATATGTTTCTCACTGCCGGTTTCTTTCCTCGTCTGCAGGCAAGAACTATCTCCTCTTCTCTTGTAATTACCAAGTTTTTCAAAAAATTTCATCGAGTTTTCATGTTAAGCGGATCGCTTTACCTTTTCATTGGAAATTCAGGTTAA 2859 42.32 SVSMASNQNLLDLQWLIQAIDSESLDLQNLSFYLSQTTSGCFLETENSVNVHISRDSFLLFSNVLTAFTTGKKALTSLRNLEFHCVNWEIEQLRNFAVLLDNSLEIKRVVFRRNGFSEDCLSELCEILKGMKTVKEIMFSESEIGSFGARVLASALKVNDSLEELQIWEDSIGSKGAEELSKMIEANSTLKVLTIFDSNAITATPLISAVLARNRTMEVHIWSKENGEKVTKIVEFLPAHSTLRIYKLNTAGSCRVACALGWNSSVKSLDMTGIRLKSRWAREFRWVLEQNQSLKELNLSKTCLKNKGVVYVAVGLFKNRHLESLYLEGNWFSDIGVEHLLCPFSRFSTLQIQANTTLTSLTFGGGRTKIGRTGLHAILVMLRTNESLIRLGICEDRSLKPEDFAKIFKSLEKNTSLRHLSLQGCNGVDGDLVLRTLMETLEVNPWLEDIDLSRTPLQNSGKTDKIHQRLGQNGRTEPEKDLLKDTPLTEPRSCRVFICGEDYAGKTTLCNSISQNFSSSKLPYADQVRSLVNPIEQSVRTVGMKIKTFKDDSTKISVWNLSGQHEFCSLHDLMFPGHGSASIFFIVSSLYRNNKEPKTASEIEEDLHYWLRFIVSNSKRAVQQCILPNATVVLTHYDKIVQPSENLQLIVNSVQSLRDKFQGFVDFYPTLFTVDARSSVSVNKLTHHLRKTSKTVLQRVPRVYQLCNDLIENLAEWRSENFNKPAMKWKEFEELCQVKVQPLRIRSRGNQKDKMETRRKAMAVCLHEMGEVVYFDELGILVLDCEWFYGEVLSQLTRLEGRKGNSAEKNGFISRKELEKILGENLRSHIPGMPSKVFENLQVSDLVRMMLKLELCYEQDKSDPNSPLLITSLLNEGRGKPQKWQITEFNCVYAGRHLECDDSSHMFLTAGFFPRLQARTISSSLVITKFFKKFHRVFMLSGSLYLFIGNSG 952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3851211 3854144 + Bma010730.1 Bma14g00307 94288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00307 952 MobiDBLite consensus disorder prediction 458 485 - -
Bma14g00307 952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 480 603 IPR027417 -
Bma14g00307 952 MobiDBLite consensus disorder prediction 468 485 - -
Bma14g00307 952 Gene3D Ribonuclease Inhibitor 225 350 IPR032675 -
Bma14g00307 952 Gene3D Ribonuclease Inhibitor 56 224 IPR032675 -
Bma14g00307 952 Gene3D Ribonuclease Inhibitor 351 483 IPR032675 -
Bma14g00307 952 Pfam C-terminal of Roc, COR, domain 720 920 IPR032171 -
Bma14g00307 952 Gene3D - 493 695 IPR027417 -
Bma14g00307 952 Pfam Leucine Rich repeat 318 340 IPR001611 GO:0005515
Bma14g00307 952 Pfam Leucine Rich repeat 290 311 IPR001611 GO:0005515
Bma14g00307 952 PANTHER PROTEIN TORNADO 1 4 919 - -
Bma14g00307 952 SMART LRR_RI_2 159 186 - -
Bma14g00307 952 SMART LRR_RI_2 319 346 - -
Bma14g00307 952 SMART LRR_RI_2 291 318 - -
Bma14g00307 952 SMART LRR_RI_2 414 443 - -
Bma14g00307 952 SMART LRR_RI_2 131 158 - -
Bma14g00307 952 Pfam Ras of Complex, Roc, domain of DAPkinase 495 621 - -
Bma14g00307 952 SUPERFAMILY RNI-like 66 462 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00307 - - - qsu:111991871 1404.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00681 Bma-Chr9:44517679 Bma14g00307 Bma-Chr14:3851211 1.86E-07 dispersed
Bma14g00307 Bma-Chr14:3851211 Bma15g00596 Bma-Chr15:7545871 7.30E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g607 . . Bda07g00394 . . . . . . . . . Car01g00970 Car09g00896 Sed07g2724 Cpe06g00796 Cpe02g00804 Bhi09g01727 Tan01g3153 Cmetu01g0554 . Hepe01g1229 Mch11g1238 . . . . . . . . Cone6ag0031 Cone9ag0031 . . Lsi02g01858 Csa07g00975 . . . . . . Bpe11g00572 . . Bma14g00307 . Cmo01g01142 Cmo09g00987 . . . . . . . . . . . . . Cla09g02047 Cam09g2135 Cec09g2201 . . . . . . Chy01g01082 Cme01g00963
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006977 1 1 2 1 1 1 2 1 1 2 1 1 0 1 1 2 1 3 2 1 1 1 1 1 1 2 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00307 Bma_Chr14 FPKM 9.024096 6.790855 7.25471 4.86026 57.55632 49.928169 50.604969 0.420166 0.0 1.205864