Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00318 ATGAAGGAATTCGGAGAGAGTGAAGACAAAATGGTTACAGACCAGGAGATATCTCAAGCTATACAATCCCTCTTCCACGACTCTTCTTCTGCATCTGCTTCAAACCGTAACACTTTCTCTACGCTTAACGGTGTCGTTCAGCAGCTGGAATCGAAGCTTGGCCTCGACCTCTCTCACAAGGTCGACTTCATACGGGCTCAGATCCAATCGCTGTTCCGCTCTCACCCTCAACAACCATCTCCCCAACCTCCTCAGAAAGAGCATTTTCCATTTCACCAAAACCCTAATTTTCAGTCGGGTCCTTTTCCTGTATCTTCCGCCTTCCAGATTTTCTCCTCTCCAGCCCCTCCTAGTAAGGCAGATTCTCCCGTCTCTGTGACGGGCTCTGAGACGCCTAAAGAAAGTTCCCAGCCTAAAACTAAGAGAAGAGGTGGACCAGGGGGTCTGAATAAGCTTTGTGGAGTCTCACCTGAACTTCAAGCAATTGTTGGCCATCCAGAACTACCAAGGACGGAGATTGTGAAACAGCTATGGGCATACATAAGGAAAAACAATCTTCAAGATCCAAGTAACAAAAGGAAAATAATTTGCAATGACGAGCTCCGTTTGGTATTTGAAACTGACTGCACTGACATGTTCAAAATGAACAAGCTCCTTTCTAAACACATCATTCCTCTTGAGCCCACAAAACCTTCAAGCTCCAAGAAGCAAAGAGTGGAAATACAATCTGGCATTAAAATCTCTGAGTCCAGTCCTTCTGTGATTATATCTGAAGCGCTTGCAAATTTTTTTGGTGTTGATGGAAGGGAAATGCTCCAACAGGAGGTTCTTAGACGCATTTGGGAATATATTAAGGTTAATCATCTTGAGGATCCCTTGAATCCAATGGCGGTTTTGTGTGATTCCAAGCTTCAAGAGCTCTTTAGTTGCGAAAGCATCTCTGCTCTAGGTATTCCAGAAGTTTTAGGACGTCATCACATATTCCGAAGATCGTGA 996 44.48 MKEFGESEDKMVTDQEISQAIQSLFHDSSSASASNRNTFSTLNGVVQQLESKLGLDLSHKVDFIRAQIQSLFRSHPQQPSPQPPQKEHFPFHQNPNFQSGPFPVSSAFQIFSSPAPPSKADSPVSVTGSETPKESSQPKTKRRGGPGGLNKLCGVSPELQAIVGHPELPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLSKHIIPLEPTKPSSSKKQRVEIQSGIKISESSPSVIISEALANFFGVDGREMLQQEVLRRIWEYIKVNHLEDPLNPMAVLCDSKLQELFSCESISALGIPEVLGRHHIFRRS 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3954943 3957540 - Bma010741.1 Bma14g00318 94299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00318 331 Gene3D SWIB/MDM2 domain 144 234 IPR036885 -
Bma14g00318 331 Gene3D SWIB/MDM2 domain 246 330 IPR036885 -
Bma14g00318 331 CDD SWIB-MDM2_like 153 223 - -
Bma14g00318 331 MobiDBLite consensus disorder prediction 74 151 - -
Bma14g00318 331 CDD SWIB-MDM2_like 254 325 - -
Bma14g00318 331 PANTHER - 126 327 - -
Bma14g00318 331 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 11 98 - -
Bma14g00318 331 SUPERFAMILY SWIB/MDM2 domain 141 228 IPR036885 -
Bma14g00318 331 Pfam SWIB/MDM2 domain 255 325 IPR003121 -
Bma14g00318 331 Pfam SWIB/MDM2 domain 153 223 IPR003121 -
Bma14g00318 331 SUPERFAMILY SWIB/MDM2 domain 247 326 IPR036885 -
Bma14g00318 331 SMART swib_2 250 331 IPR019835 -
Bma14g00318 331 SMART swib_2 149 228 IPR019835 -
Bma14g00318 331 MobiDBLite consensus disorder prediction 89 134 - -
Bma14g00318 331 ProSiteProfiles SWIB/MDM2 domain profile. 148 225 IPR003121 -
Bma14g00318 331 Pfam DEK C terminal domain 38 72 IPR014876 -
Bma14g00318 331 ProSiteProfiles SWIB/MDM2 domain profile. 249 328 IPR003121 -
Bma14g00318 331 PANTHER - 11 98 - -
Bma14g00318 331 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 126 327 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00318 K15223 UAF30, SPP27; upstream activation factor subunit UAF30 - csv:101217066 474.552
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g01280 Bma14g00318 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00273 Bma-Chr12:3653000 Bma14g00318 Bma-Chr14:3954943 3.51E-10 dispersed
Bma13g01088 Bma-Chr13:43850285 Bma14g00318 Bma-Chr14:3954943 6.64E-07 dispersed
Bma06g01213 Bma-Chr6:49253161 Bma14g00318 Bma-Chr14:3954943 1.40E-09 transposed
Bma13g01077 Bma-Chr13:43619957 Bma14g00318 Bma-Chr14:3954943 5.46E-07 wgd
Bma14g00318 Bma-Chr14:3954943 Bma07g01280 Bma-Chr7:48463550 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g593 Blo03g00535 Blo03g01462 Bda07g00384 Bda09g00413 . Bpe08g01108 . . . . Cma01g01104 . Car01g00976 . . . Cpe02g00797 Bhi09g01716 . . . . . . . . . . . . . Cone6ag0039 Cone9ag0041 . . Lsi02g01868 Csa07g00991 . . . . . . Bpe11g00562 . Bma07g01280 Bma14g00318 . Cmo01g01150 . . . . . . . . . . . . . . Cla09g02037 Cam09g2126 . . . . . . . Chy01g01071 Cme01g00979
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004875 2 3 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58305 PF02201 SWIB 5.20E-18 No_clan Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00318 Bma_Chr14 FPKM 4.442661 4.29732 6.278794 5.450876 9.46995 9.73932 10.443695 6.159378 7.172027 7.497982