Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00336 ATGGCGTCTCTCATATGCAAAGAGGCTGTGTCTTTCATGGAGGTTCTTGTCTCAGCTGTTTTTCATGGAATTGGGTTTTTGATTACGCTGTCAGAGAGAATAGCTTTTGTTGCATTTGCATGCTTTCTTGCTGTAGGAGGTTCATTAATGGGGACTATCTTTGGAGCCATGAATGGACAGAGGAAGGGGTTTGGGTTCCTAAATGGTGCTGGAATAGGACTCATTACAGGGGCATTTGTAGCCATTAAATTGCTTGAATTTGCTGATGAACGTCCCTCATTGTCCAAAGTCGATCTTTTGGCTAGTTTGGTCAATAGAAATGCATTCGTTGAATATTGGATGGTTGAATCTATCTATAGAGAAATTTCAGACATTAAAGATTCTGGGTCTGAAGGATTATCAAAAAGCTGTGTTCAAAAGCTGCCAGTGTTCAAGTTTCACTCATGCAGATCAAAGAATGAACCACAAAGCAATGGCTTTCGTTGCCCTATATGTTTGGAGGATTTGAAAGCTGGAGATATTGTAAGAAGTCTGCCAGATTGTGAACATTTCTTCCATTTGGAATGCATAGACAAATGGCTTCATTTACGTGGATCTTGTCCTACATGCAGAAAAATCATCTCTGTTCATGATTCAGCTCAACATTTGACTTCAATTTTTCAAATTTTGACCAAGCGCAAAATGTGA 687 39.45 MASLICKEAVSFMEVLVSAVFHGIGFLITLSERIAFVAFACFLAVGGSLMGTIFGAMNGQRKGFGFLNGAGIGLITGAFVAIKLLEFADERPSLSKVDLLASLVNRNAFVEYWMVESIYREISDIKDSGSEGLSKSCVQKLPVFKFHSCRSKNEPQSNGFRCPICLEDLKAGDIVRSLPDCEHFFHLECIDKWLHLRGSCPTCRKIISVHDSAQHLTSIFQILTKRKM 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4188521 4190440 + Bma010757.1 Bma14g00336 94317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00336 228 ProSiteProfiles Zinc finger RING-type profile. 162 204 IPR001841 -
Bma14g00336 228 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 206 - -
Bma14g00336 228 CDD RING-H2_PA-TM-RING 162 204 - -
Bma14g00336 228 Pfam Ring finger domain 161 204 IPR001841 -
Bma14g00336 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 209 IPR013083 -
Bma14g00336 228 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 3 206 IPR044523 -
Bma14g00336 228 SMART ring_2 162 203 IPR001841 -
Bma14g00336 228 SUPERFAMILY RING/U-box 152 215 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00336 - - - dzi:111301598 190.274
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g01295 Bma14g00336 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00946 Bma-Chr3:10025418 Bma14g00336 Bma-Chr14:4188521 2.69E-25 dispersed
Bma07g01331 Bma-Chr7:48817730 Bma14g00336 Bma-Chr14:4188521 2.07E-66 dispersed
Bma09g00185 Bma-Chr9:7221804 Bma14g00336 Bma-Chr14:4188521 3.30E-26 dispersed
Bma14g00336 Bma-Chr14:4188521 Bma14g00551 Bma-Chr14:5962704 3.89E-18 dispersed
Bma14g00336 Bma-Chr14:4188521 Bma07g01295 Bma-Chr7:48570884 2.03E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g512 . Blo03g01452 Bda07g00364 . . Bpe08g01122 . . . . . Cma09g00954 . Car09g00868 . . . Bhi09g01646 . . . Hepe01g1274 . . . . . . . . . . . . . . Csa07g01092 . . . . . . . . Bma07g01295 Bma14g00336 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014791 1 0 1 2 1 0 1 0 0 0 0 0 1 1 1 0 0 2 1 0 1 0 1 0 0 0 0 2 0 1 17
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00336 Bma_Chr14 FPKM 5.335386 4.846188 2.949669 2.484935 11.376965 0.0 8.143707 1.702498 1.511769 2.222489