Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00339 ATGAGCGTGGTGGGGTTTGATATTGGCAATGAGAATTGTGTTATAGCTGTGGTGAATAAACGAGGTATTGATGTTTTGCTAAATGATGAATCAAAACGGGAAACCCCAGCAGTTGTATGCTTTGGTGAGAAACAGCGATTTCTGGGATCTGCAGGAGCTGCATCTGCGATGATGAATCCAAAATCAACAATATCTCAGGTGAAGAGACTCACTGGCCGGAGGTTTAATGACCCTGGCATCCAAAATGATCTGAAGCTGTTATCTTTTGAAACTTCTGAAGCTTCAGACGGTGGTATATTGATTCACTTGAGATATTTGGGGGAGACTCATACATTTACTCCTGTACAGATTATGGCAATGCTCTTTGCACATTTGAAAGATATAACTGAGAAAAATTTGGAAGCACCCATTTCAGATTGTGTTATTAGTATTCCGTCATACTTCACTGACGTGCAGAGACGGGCATATCTTAATGCTGCAGCAATTGCTGGTTTAAAATCTTTAAGGCTTATGCATGATTGTACTGCAACTGCACTTACCTATGGGATTTATAAAACAGACTATTCTACCACAGGCATATCCTTTGCTGCTTTTGTTGATATTGGTCATTGTGACACTCAAGTCTGTATAGTCTCATTTGTGGCTGGACATATGAAAATATTGTCTCATACTTTTGATGCAAACTTGGGAGGGAGAGACTTTGATGAGGTTTTGTTTAGTTACTTTGCAACGAAATTCCAGGAGCAGTATAATATTGACGTGAATTCAAATGTCAAGGCAGGTATTCGGCTGCGGGCTGCCTGTGAGAAGGTGAAGAAAGTTTTAAGTGCAAATCTAGAGGCACCTCTAAACATTGAGTGCTTGATGGATGAGAAAGATGTCAAGGGTTTCATTAAGAGGGAAGAATTTGAGAAGCTAGCTTCTGGATTGTTGGAGAGAATTAGCATTCCTTGTCATAGAGCTTTAGCTGATGCAGGATTGACTGCAGAGAAGATCCATTCTGTTGAGCTTGTTGGATCGGGGTCTAGGATTCCAGCTATTTCTAGATTATTAACTACACTCTTTAAGAGAGAGCCCAGTCGGACACTAAATGCTAGTGAATGTGTAGCTCGTGGATGTGCTTTACAGTGTGCGATGCTAAGCCCAATTTTCCGAGTCAGAGATTATGAGGTTGAAGATTCAATTCCTTTCTCTATTGGGTTCTCATCAGATGGAGGCCCAATTAGCATCGGCTCAAATGGGATATTGTTTCCTAAAGGCCAATCCATTCCATGCAGTAAAGTTTTGTCATTTCAACGGGGGCCTTTATTTCATTTAGAAGCATACTATGCTGATCCAGAAGAACTGCCAGCTGATAAGCCTTCAAAAATATGTTATTACACAGTGGGTCCTTTACAAGGTTACCATAATGAGAAGGCAAAGATTAAAGTTAGAGTTCAGCTAAATCTCCATGGGATTGTTGCGGTTGATTCAGCTACTGTATGTAAATCTAATGTTGATAACAATTATGGTAATATAGGGATCTTATTAATGCAGTTAATAGAAGATATTGAAGAAGATTCAGAGTGTAATCCTGCTTCAGGTAATTTTGAGATTGATGCAGTTGATGGTGATGAAAGCAACATTGGTCAGTCCAAAGTTTCGCATTCTTCGAATCACAAGGTATTGCAGGTCAATGCTATGAAAAAAGGTAAGATGTCCAAAAGGATTGAGATACCTATTAGTGAGCACATATATGGTGGAATGACCCAGGCAGAGCTTTCAGAAGCCCAAGAGAGAGAACTTCAGCTTGCCCAACAGGACAAGACAATTGAACAAACCAAAAACAAGAAAAATGCATTGGAGTCATATGTCTATGAAATGCGGAATAAGCTTTTCAACACATATCGGAGTTTTGCGACTGACGAAGAGAGGGAGGGAATCTCCACAAGCCTTCAACAGACAGAGGAGTGGCTTTATGAGGATGGAGATGATGAAATTGAAAGTACTTATACTTCAAAGTTGGAGAATCTTAAGAAGTTGGTAGATCCTATTGAAGATCGATATAGAGATGAAGAAGCGCGAGGGCAAGCTGCTAATGCCCTGTCAAAGAGTATATTGGAATATCGAAAGGCTGCAGATTCACTCCCCCCCAAGGACAAGGAAATGATCATGGAGGAGTGTGATAAAGCTGAGCAGTGGCTCAGCGAGAGAACCACCCAACAAGATTTGATGCCAAAAAACACAGACCCAATCTTATGGTCAAGTGATATCAAAAGCCGGGCAGAGAATTTGGATGGGTACTATTTTGTTTCTTATTTAAATATAGATATACTGAGCATCCTAAATATTAGCTGTAGGAATCGATTTTCATGGTGGTTGAGCCTTATCTGCTGTTGCAAACATGAGATAATTATTTCCCTTTGTTCATATTCATCTTTTACTAAACTAAATTGA 2436 39.9 MSVVGFDIGNENCVIAVVNKRGIDVLLNDESKRETPAVVCFGEKQRFLGSAGAASAMMNPKSTISQVKRLTGRRFNDPGIQNDLKLLSFETSEASDGGILIHLRYLGETHTFTPVQIMAMLFAHLKDITEKNLEAPISDCVISIPSYFTDVQRRAYLNAAAIAGLKSLRLMHDCTATALTYGIYKTDYSTTGISFAAFVDIGHCDTQVCIVSFVAGHMKILSHTFDANLGGRDFDEVLFSYFATKFQEQYNIDVNSNVKAGIRLRAACEKVKKVLSANLEAPLNIECLMDEKDVKGFIKREEFEKLASGLLERISIPCHRALADAGLTAEKIHSVELVGSGSRIPAISRLLTTLFKREPSRTLNASECVARGCALQCAMLSPIFRVRDYEVEDSIPFSIGFSSDGGPISIGSNGILFPKGQSIPCSKVLSFQRGPLFHLEAYYADPEELPADKPSKICYYTVGPLQGYHNEKAKIKVRVQLNLHGIVAVDSATVCKSNVDNNYGNIGILLMQLIEDIEEDSECNPASGNFEIDAVDGDESNIGQSKVSHSSNHKVLQVNAMKKGKMSKRIEIPISEHIYGGMTQAELSEAQERELQLAQQDKTIEQTKNKKNALESYVYEMRNKLFNTYRSFATDEEREGISTSLQQTEEWLYEDGDDEIESTYTSKLENLKKLVDPIEDRYRDEEARGQAANALSKSILEYRKAADSLPPKDKEMIMEECDKAEQWLSERTTQQDLMPKNTDPILWSSDIKSRAENLDGYYFVSYLNIDILSILNISCRNRFSWWLSLICCCKHEIIISLCSYSSFTKLN 811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4220531 4224620 - Bma010760.1 Bma14g00339 94320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00339 811 CDD HSPA4_like_NDB 2 381 - -
Bma14g00339 811 Gene3D - 582 694 IPR029048 -
Bma14g00339 811 PRINTS 70kDa heat shock protein signature 2 15 - -
Bma14g00339 811 PRINTS 70kDa heat shock protein signature 140 160 - -
Bma14g00339 811 PRINTS 70kDa heat shock protein signature 472 488 - -
Bma14g00339 811 PRINTS 70kDa heat shock protein signature 388 407 - -
Bma14g00339 811 PRINTS 70kDa heat shock protein signature 332 348 - -
Bma14g00339 811 PRINTS 70kDa heat shock protein signature 30 42 - -
Bma14g00339 811 PRINTS 70kDa heat shock protein signature 363 383 - -
Bma14g00339 811 Gene3D - 38 113 - -
Bma14g00339 811 PANTHER HSC70CB, ISOFORM G-RELATED 1 759 - -
Bma14g00339 811 Gene3D - 186 360 - -
Bma14g00339 811 Coils Coil 668 688 - -
Bma14g00339 811 Gene3D Actin; Chain A, domain 4 230 313 - -
Bma14g00339 811 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 384 615 IPR029047 -
Bma14g00339 811 SUPERFAMILY Actin-like ATPase domain 197 380 IPR043129 -
Bma14g00339 811 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 584 682 IPR029048 -
Bma14g00339 811 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Bma14g00339 811 Gene3D - 5 374 - -
Bma14g00339 811 Pfam Hsp70 protein 520 682 IPR013126 GO:0005524|GO:0140662
Bma14g00339 811 Pfam Hsp70 protein 3 496 IPR013126 GO:0005524|GO:0140662
Bma14g00339 811 PANTHER HEAT SHOCK 70 KDA PROTEIN 16 1 759 - -
Bma14g00339 811 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 503 IPR029047 -
Bma14g00339 811 Coils Coil 590 617 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00339 K09489 HSPA4; heat shock 70kDa protein 4 - jre:108983997 1067.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01090 Bma-Chr7:43685408 Bma14g00339 Bma-Chr14:4220531 1.48E-71 dispersed
Bma14g00196 Bma-Chr14:2485020 Bma14g00339 Bma-Chr14:4220531 8.13E-68 dispersed
Bma14g00339 Bma-Chr14:4220531 Bma15g00380 Bma-Chr15:4238226 0 dispersed
Bma14g00339 Bma-Chr14:4220531 Bma09g00928 Bma-Chr9:48669199 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g507 Blo03g00559 . Bda07g00360 . . . . . . . Cma01g01133 Cma09g00950 . Car09g00863 . Cpe06g00765 Cpe02g00768 . . . . . . . . . . . . . . . . Cone14ag1142 Cone15ag1160 Lsi04g01203 . . . . . . . Bpe11g00547 . . Bma14g00339 . Cmo01g01184 Cmo09g00948 . . . Car16g00544 . . . . . . . . . Cla05g01487 . Cec05g1613 . Clacu05g1583 Cmu05g1486 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004049 1 5 1 1 1 1 2 3 1 1 1 1 2 1 1 2 1 2 2 2 1 1 1 1 1 1 1 3 2 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00339 Bma_Chr14 FPKM 5.634265 7.094571 7.63469 6.707754 11.586951 9.022593 12.513307 13.756913 13.231405 15.068187