Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00340 ATGCCTCACATGTCGCAGATGGCGTCGAATCAGATGCCCCAGCAGTATCCGCAGCAGCCGATGCCTCCCCAGCAGCAGTGGATGATGATGCCGCCGCAGCAGCAGCACGCGCCGCCACAGCCGATGCCTCCGCCTGCTGGATGGACTCCGCAGCCGGTACCTCCCCCTATCTCTGTTCCCGCGCAGCAGTTTCCCCCAGCTACGGGATCCGGGGAGGTTCGTTCCCTTTGGATCGGGGATTTGCAGCAGTGGATGGACGAGAACTATCTCGTCTCCTGTTTCGGTCAGACTGGTGAGGTTATAACTGCAAAGGTTATTCGCAATAAGCTTTCTGGAATGCCTGAAGGTTATGGGTTTGTTGAGTTTGGAAGCAGGGCTGCTGCAGAGAGGACTTTGCAAACGTTCAATGGTACATTGATGCCAAATTCTGACCAGAATTTTCGACTCAACTGGGCTACTCTAAGTGCCGGTGAAAGACGTCAAGACGATGGTCTTGATTATACAATTTTTGTTGGAGATTTGGCCGCAGATGTCACTGATTATACCCTTCAAGAAACATTTAAATCAGTGTATCACTCAGTGAAGGGGGCAAAAGTTGTCACTGATCGGACCACTGGGCGATCCAAGGGTTATGGGTTTGTGAGGTTTGGTGATGAGAATGAACAGCTACGTGCCATGACTGAAATGAATGGTATGTACTGTTCTACTAGGCCCATGCGAGTGGGCCCTGCTGCGTCAAAGAAATCTATTGGCGATGTTGGACAACCTCAGAAAGGTATTCTTGATTTACTTCATTCATTCTTTGCAGTTACCTACGAGAATACTCAAGGACATCCAGGGGAGAATGATCCAAATAATACAACAATATTTGTTGGAGGCTTGGATACAAGCGTTACTGATGAGCTATTGAGACAAGTTTTTTCCCAATTTGGTGAGCTTGTCCATGTGAAAATTCCTGCTGGAAAGCGCTGTGGTTTTGTTCAGTTTGTTAACAGAACTTGTGCAGAGCAAGCTATATCCATGCTGAATGGAACTCAATTAGGTGGTCAAAATATTCGACTTTCCTGGGGGCGTAGTCCAACTAATAAACAGGGTCAGCCAGATCAGGCTCAGTGGAATAGCGGATACTATGGGCATGCACAAGGATATAACACATATGGATATGTTCCAAATCCCCAAGATCATAACATGTATTACGGAGGGTACCCTGGATATGGAAATTACCAGCAGCCTGGTGCGTACCAGCAGCCACAGCAGGTAAAATCTTTTTTTCATCATTATCAGTTACTACAAATAAATATACTGTTTGATACATAG 1317 46.92 MPHMSQMASNQMPQQYPQQPMPPQQQWMMMPPQQQHAPPQPMPPPAGWTPQPVPPPISVPAQQFPPATGSGEVRSLWIGDLQQWMDENYLVSCFGQTGEVITAKVIRNKLSGMPEGYGFVEFGSRAAAERTLQTFNGTLMPNSDQNFRLNWATLSAGERRQDDGLDYTIFVGDLAADVTDYTLQETFKSVYHSVKGAKVVTDRTTGRSKGYGFVRFGDENEQLRAMTEMNGMYCSTRPMRVGPAASKKSIGDVGQPQKGILDLLHSFFAVTYENTQGHPGENDPNNTTIFVGGLDTSVTDELLRQVFSQFGELVHVKIPAGKRCGFVQFVNRTCAEQAISMLNGTQLGGQNIRLSWGRSPTNKQGQPDQAQWNSGYYGHAQGYNTYGYVPNPQDHNMYYGGYPGYGNYQQPGAYQQPQQVKSFFHHYQLLQINILFDT 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4227473 4231221 - Bma010761.1 Bma14g00340 94321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00340 438 MobiDBLite consensus disorder prediction 34 49 - -
Bma14g00340 438 MobiDBLite consensus disorder prediction 1 15 - -
Bma14g00340 438 CDD RRM1_SECp43_like 75 153 - -
Bma14g00340 438 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 20 417 - -
Bma14g00340 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 76 142 IPR000504 GO:0003723
Bma14g00340 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 169 237 IPR000504 GO:0003723
Bma14g00340 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 289 353 IPR000504 GO:0003723
Bma14g00340 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 287 359 IPR000504 GO:0003723
Bma14g00340 438 CDD RRM3_NGR1_NAM8_like 286 357 - -
Bma14g00340 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 167 246 IPR000504 GO:0003723
Bma14g00340 438 Gene3D - 166 242 IPR012677 -
Bma14g00340 438 SMART rrm1_1 168 242 IPR000504 GO:0003723
Bma14g00340 438 SMART rrm1_1 288 355 IPR000504 GO:0003723
Bma14g00340 438 SMART rrm1_1 75 150 IPR000504 GO:0003723
Bma14g00340 438 SUPERFAMILY RNA-binding domain, RBD 275 386 IPR035979 GO:0003676
Bma14g00340 438 CDD RRM2_SECp43_like 166 245 - -
Bma14g00340 438 MobiDBLite consensus disorder prediction 1 49 - -
Bma14g00340 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 74 154 IPR000504 GO:0003723
Bma14g00340 438 Gene3D - 270 368 IPR012677 -
Bma14g00340 438 Gene3D - 73 153 IPR012677 -
Bma14g00340 438 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 20 417 - -
Bma14g00340 438 SUPERFAMILY RNA-binding domain, RBD 166 257 IPR035979 GO:0003676
Bma14g00340 438 SUPERFAMILY RNA-binding domain, RBD 36 154 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00340 - - - pvy:116106302 550.051
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00991 Bma-Chr9:49404522 Bma14g00340 Bma-Chr14:4227473 1.38E-34 dispersed
Bma13g01081 Bma-Chr13:43645877 Bma14g00340 Bma-Chr14:4227473 0 dispersed
Bma13g01053 Bma-Chr13:43224008 Bma14g00340 Bma-Chr14:4227473 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g501 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00909 Blo10g00824 Bda05g00725 Bda12g00903 . Bpe03g00795 . Bma14g00340 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002064 4 5 3 6 2 2 0 1 1 0 0 2 2 2 2 3 2 6 1 2 1 2 2 2 1 2 2 3 2 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00340 Bma_Chr14 FPKM 8.011455 3.779873 2.532176 2.49364 6.855176 5.987987 6.528238 0.0 0.0 0.0