Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00343 ATGCGCGATTTCTGCTTCACGATCCCGTATGGGTTGGTGCTGGTGGGAGGCGGGATTTTTGGATATTTCAGGAAAGGGAGCGTGGCATCATTGGGTGGAGGCGTGGCCGTTGGACTGGTTCTCATTCTGGCTGGATATCTGAGCCTCGAAGCTTTTAAGAAGAGGAAGAACTCATACCCTGCTCTGATTCTCGAGACAATTTGTGCTGCCACACTCACATGGGTCATGGGACAACGCTATCTGCAAACCTCTAAGATTATGCCAGCCGGCATCATTGCCGGGATCAGGTGA 291 51.89 MRDFCFTIPYGLVLVGGGIFGYFRKGSVASLGGGVAVGLVLILAGYLSLEAFKKRKNSYPALILETICAATLTWVMGQRYLQTSKIMPAGIIAGIR 96
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4240134 4246408 + Bma010764.1 Bma14g00343 94324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00343 96 PANTHER PROTEIN FATTY ACID EXPORT 5-LIKE 1 96 - -
Bma14g00343 96 PANTHER TRANSMEMBRANE PROTEIN 14, 15 1 96 IPR005349 GO:0016020
Bma14g00343 96 Gene3D - 1 96 IPR044890 -
Bma14g00343 96 Pfam Transmembrane proteins 14C 6 95 IPR005349 GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00343 - - - jre:108993653 157.532
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g01301 Bma14g00343 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02052 Bma-Chr1:75822143 Bma14g00343 Bma-Chr14:4240134 4.70E-10 dispersed
Bma14g00343 Bma-Chr14:4240134 Bma07g01301 Bma-Chr7:48603876 4.48E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g495 . . Bda07g00358 Bda09g00397 . Bpe08g01127 . . . . Cma01g01135 . . . . . Cpe02g00766 . . . . . . . . . . . . . . . . . . Lsi04g01207 . . . Blo07g00910 . Bda05g00726 . Bpe11g00543 . Bma07g01301 Bma14g00343 . Cmo01g01186 . . . . Car16g00546 . . . . . . . . . Cla05g01494 Cam05g1610 . Cco05g1639 Clacu05g1590 Cmu05g1493 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005657 3 1 2 2 2 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00343 Bma_Chr14 FPKM 13.821357 14.51916 0.755267 0.516407 1.203913 1.53452 1.557713 0.0 0.102551 0.0