Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00349 ATGGCCGCCTCCGCTACCCTTGCCTCCAAAACTCTCCCTTCGTCGCTTTCGTTTCCTGATTCTATCTCTCAATTGCCCTTCAAGGCTGACAGAGTTGGTATCCCCCCCTTGTCTCTTTCGCGGACGGCCTCCATTTCCTGCGCCCTCACCAAAGACCGTTCTCTCGAAATGGAAGGAAAGGTCAGTTCCGTCCTGAGCCTACGACCGGATTCTTTCGGACGGTTTGGTAAGTTTGGGGGAAAGTATGTGCCGGAAACCTTAATGCATGCCCTCACGGAGCTAGAGACCGCATTTCACCAGCTCGCCGGGGACGAGGATTTTCAGAAAGAGTTAGATGGGATTCTGAAAGATTACGTCGGAAGGGAGAGCCCCCTTTACTTCGCCGAGCGACTTACAGACCATTACAGACGTCCTAACGGGGAAGGGCCTCTTATTTATCTGAAGAGAGAAGATCTGAACCACACAGGTGCTCACAAAATCAACAATGCCGTTGCTCAAGCTTTGCTTGCCAAGCGATTGGGAAAGAAGCGAATCATAGCTGAAACTGGAGCCGGACAGCATGGAGTCGCCACTGCAACTGTCTGTGCTCGGTTTGGGCTCGAGTGTATCATCTACATGGGTGCCCAAGATATGGAGAGGCAATCTCTCAATGTGTTCAGAATGCGCCTTCTCGGGGCTGAGGTTAGAGCGGTCCATTCTGGTACAGCTACATTGAAAGATGCTACATCGGAAGCTATAAGGGACTGGGTGACTAACGTAGAGACGACTCACTACATTTTGGGCTCGGTTGCCGGGCCGCATCCATATCCGATGATGGTCAGAGATTTCCATGCAGTAATCGGCAAGGAAACTAGAAAACAAGCAATGGAGAAGTGGGGAGGGAAACCAGAGATTCTGGTCGCATGTGTTGGTGGTGGTTCAAACGCCATGGGGCTATTTCACGAGTTTGTTGATGACGATGATGTCAGATTGATCGGTGTTGAGGCTGCAGGCTTTGGGTTAGATAGTGGTAAACATGCAGCTACTTTGACAAAAGGTGAAGTTGGGGTTTTGCATGGAGCTATGAGTTACTTATTACAGGATGAAGATGGCCAAATAATTGAGCCTCATTCAATTAGTGCAGGCTTGGATTACCCTGGCGTCGGTCCAGAGCACAGTTTTCTGAAGGATGCAGGCCGTGCGGAATACTACTGCGTTACAGATGAAGAAGCATTGGAAGCGTTCAAGAGATTATCCCGATTAGAGGGCATAATCCCAGCTTTGGAGACATCCCATGCTTTGGCTTATTTGGAGCAGCTCTGCCCGACTCTGCCAAACGGCGTGAAAGTGGTGGTGAACTGCAGTGGGAGAGGAGACAAGGATGTTCATACTGCAATCAAGCATTTACAGGTC 1392 50.07 MAASATLASKTLPSSLSFPDSISQLPFKADRVGIPPLSLSRTASISCALTKDRSLEMEGKVSSVLSLRPDSFGRFGKFGGKYVPETLMHALTELETAFHQLAGDEDFQKELDGILKDYVGRESPLYFAERLTDHYRRPNGEGPLIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHGVATATVCARFGLECIIYMGAQDMERQSLNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRKQAMEKWGGKPEILVACVGGGSNAMGLFHEFVDDDDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDAGRAEYYCVTDEEALEAFKRLSRLEGIIPALETSHALAYLEQLCPTLPNGVKVVVNCSGRGDKDVHTAIKHLQV 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4297392 4299362 + Bma030658 Bma14g00349 94330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00349 464 PANTHER TRYPTOPHAN SYNTHASE BETA CHAIN 1, CHLOROPLASTIC-RELATED 18 464 - -
Bma14g00349 464 Hamap Tryptophan synthase beta chain [trpB]. 68 462 IPR023026 GO:0000162|GO:0004834
Bma14g00349 464 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 69 461 IPR036052 -
Bma14g00349 464 ProSitePatterns Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 152 166 IPR006653 GO:0004834|GO:0006568
Bma14g00349 464 Gene3D - 75 277 IPR036052 -
Bma14g00349 464 Pfam Pyridoxal-phosphate dependent enzyme 119 449 IPR001926 -
Bma14g00349 464 Gene3D - 120 455 IPR036052 -
Bma14g00349 464 PIRSF Trp_syn_beta 57 464 IPR023026 GO:0000162|GO:0004834
Bma14g00349 464 CDD Trp-synth_B 90 457 IPR006654 GO:0004834|GO:0006568
Bma14g00349 464 PANTHER TRYPTOPHAN SYNTHASE-RELATED 18 464 - -
Bma14g00349 464 TIGRFAM trpB: tryptophan synthase, beta subunit 73 461 IPR006654 GO:0004834|GO:0006568
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00349 K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] - csv:101220286 780.785
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g00349 Bma-Chr14:4297392 Bma14g01081 Bma-Chr14:13118691 2.53E-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g472 Blo03g00575 Blo03g01443 Bda07g00347 Bda09g00390 . Bpe08g01133 . . . . Cma01g01141 . . . Sed07g2665 . Cpe02g00759 Bhi09g01922 Tan01g4526 Cmetu04g1540 . Hepe01g1295 Mch11g1169 . . . . . . . . Cone6ag0078 Cone9ag0093 . . Lsi04g01224 . . . . . . . Bpe11g00532 . . Bma14g00349 . Cmo01g01193 . . . . Car16g00553 . . . . . . . . . Cla05g01511 Cam05g1626 Cec05g1630 Cco05g1658 Clacu05g1611 Cmu05g1511 . . . . Cme04g00849
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008087 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00349 Bma_Chr14 FPKM 1.304869 1.534646 1.697982 1.891261 9.259912 9.834201 10.370902 0.082776 0.116374 0.0