Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00352 ATGGAAGAATTATTTGTTGCAATCCTGTCCATGCTTTTAATTATTGGATTAATTCCGCTTTATTTGTGGAAACGACGTCTGGATTCTCGTGCTTCTGATGAGCGCGAAGAAGAGCATCAGGTTCCACAGAGGGAAACTGTAATTCGAGCTACTGGTGCTCGTCGCATGCGCAGGAGACCAGCTTCAGGAGCGAGTAGTTCATCAGCTCCTGCAGCTGTAGTGGAAGGAAATGTTGAAGGTAGTGATGACGAAGCTGTTGAAAATGAACATTATGAAGCGAAAGCATTAAAGAAGAAAGAAAAAAAGCGGCAAGAGCGTGAGGAACAGAGACAGGCTGATCGAGCTTTTCAAGATTCAAGGCAAACAAAACAAGACCATTATGCAGAAATGCGGAGAAGGAAAGACGAAGAGCGGGAGAAGCAGGAGAGAATACTTGAAGAAGAAGCTAAGGCTCAGAAGGCCAAGGAGGAGGAAGCTGCTGCATTAGAGTTTGAGAAATGGAAAGGCGAATTTTCTATTGATGCTGAAGGTACTACTGAAGCTGAGATTCAAGATGGAAGTCAAGATTTGCTTTCTGATTTTGTTGAATTTATAAAGGTACTTGTGGCAGATTCAGACAAATTCGCATATTCTCTTGCAGAGCCGTGGGCTAAACTAGTCCAATTAGTTCAACAAAGAGGTGGCTTTTCTCACATAATTGCTGCTACGAGTTCTTTTGGGAAAAACATTCTTCCACGTGCAGCTGCTCTTTTAGATGTTTCTCCGATCACCGATGTGATTCAAATATTGGAATCCCATCTATTTGTGAGGCCGATATATGCAGGCAATGCACTTGCTAATGTTCGATACACTGGCTCTGATCCTTGTATGTTGACCATTAGATCTACATCTTTTCCTGTGGCATCGACCTCTGCTGAATCAAAATCTAACAAGGCATCCATTTCTCAGGTTGATCTTTCAGCCTTTGGCGATGACTCTATTGGCAAATCTAGATATGTGAAACACACATCTCAAGATAAAGAACGACCCGACCTTGGGACTGCTCGTGTTGTTGTAACAGGAGGGCGGGCTTTGAAAAGTGCGGAGAACTTCAAAATGATTGATAAGCTTGCAGGAAAACTTGGGGCAGCTGTTGGAGCGACTCGTGCTGCCGTTGATGCTGGTTTTGTTCCCAATGAGCTTCAGGTTGGACAAACTGGAAAGATTGTTGCACCAGAATTGTATATGGCTTTTGGTGTATCAGGAGCCATTCAACACTTGGCCGGGATGAGAGACTCAAAAGTCATTGTAGCTGTAAATAAAGACGCAGATGCACCAATATTTCAGGTTGCTGACTACGGGCTCGTCGGTGATCTCTTTGAGGTGATACCGGAGTTGTTAGACAAGTTACCTGAGAGAAAATAA 1404 43.59 MEELFVAILSMLLIIGLIPLYLWKRRLDSRASDEREEEHQVPQRETVIRATGARRMRRRPASGASSSSAPAAVVEGNVEGSDDEAVENEHYEAKALKKKEKKRQEREEQRQADRAFQDSRQTKQDHYAEMRRRKDEEREKQERILEEEAKAQKAKEEEAAALEFEKWKGEFSIDAEGTTEAEIQDGSQDLLSDFVEFIKVLVADSDKFAYSLAEPWAKLVQLVQQRGGFSHIIAATSSFGKNILPRAAALLDVSPITDVIQILESHLFVRPIYAGNALANVRYTGSDPCMLTIRSTSFPVASTSAESKSNKASISQVDLSAFGDDSIGKSRYVKHTSQDKERPDLGTARVVVTGGRALKSAENFKMIDKLAGKLGAAVGATRAAVDAGFVPNELQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPELLDKLPERK 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4313712 4325866 - Bma010772.2 Bma14g00352 94333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00352 467 SMART DDRGK_2 89 246 IPR019153 -
Bma14g00352 467 PANTHER ELECTRON TRANSFER FLAVOPROTEIN SUBUNIT ALPHA, MITOCHONDRIAL 145 465 - -
Bma14g00352 467 SUPERFAMILY DHS-like NAD/FAD-binding domain 343 463 IPR029035 -
Bma14g00352 467 Gene3D HUPs 179 336 IPR014729 -
Bma14g00352 467 PANTHER ELECTRON TRANSFER FLAVOPROTEIN ALPHA 145 465 IPR001308 GO:0009055|GO:0050660
Bma14g00352 467 MobiDBLite consensus disorder prediction 83 141 - -
Bma14g00352 467 Coils Coil 88 118 - -
Bma14g00352 467 Gene3D - 338 465 - -
Bma14g00352 467 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 199 309 - -
Bma14g00352 467 CDD ETF_alpha 199 318 IPR033947 -
Bma14g00352 467 Pfam Electron transfer flavoprotein domain 199 320 IPR014730 -
Bma14g00352 467 Coils Coil 120 165 - -
Bma14g00352 467 ProSitePatterns Electron transfer flavoprotein alpha-subunit signature. 407 433 IPR018206 -
Bma14g00352 467 Pfam Electron transfer flavoprotein FAD-binding domain 344 424 IPR014731 -
Bma14g00352 467 SMART ETF_2 161 326 IPR014730 -
Bma14g00352 467 Pfam DDRGK domain 97 199 IPR019153 -
Bma14g00352 467 MobiDBLite consensus disorder prediction 32 141 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00352 K03522 fixB, etfA; electron transfer flavoprotein alpha subunit - fve:101300128 442.195
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g462 Blo03g00578 . Bda07g00344 . . . . . . . . Cma09g00935 . Car09g00848 Sed07g2661 Cpe06g00752 . Bhi09g01931 Tan01g4520 Cmetu04g0908 . Hepe01g1300 Mch11g1164 . . . . . . . . . Cone9ag0097 . . Lsi04g01229 . . . . . . . Bpe11g00529 . . Bma14g00352 . . Cmo09g00932 . . . . . . . . . . . . . Cla05g01520 Cam05g1633 . Cco05g1669 Clacu05g1622 Cmu05g1520 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009641 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00352 Bma_Chr14 FPKM 0.188596 0.164552 0.184554 0.349263 0.399136 0.487516 0.287033 1.198149 1.587909 1.56731