Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00357 ATGGTTTCACCGGAAACCACTAATTGGCTCTACGACTACGGAGTGATCGAAGATATCCCTGTCCATGATGGGAATTTCTCTGTTTCCAATTCTGGGTTTTCTTGGCCTGTGCAGGCCTTGAATGGCTCATCTAATGTCAGCATGGAAATCGATGAGTCATTGATAAATTCAGATTGCCCCCAGAAATCATGCCTGAAAAAGAGGGTTAGATCTGAATCAAGTTCTGTATCCAGCTCCAAAGCGTGCAGAGAGAAGTTGAGGAGAGACAGGCTGAATGACAAGTTTCTGGAATTGGGCTCTATTCTGGATCCCGGAAGACCCCCCAAAACAGACAAGGCTGCAATTTTAGTTGATGCTGTTCGAATGGTGACTCAATTACAAGGCGAAGCCCAGAAGTTGAAGGACTCGAATTTAAGTCTTCAGGAGAAGATTAAAGAGTTGAAGGCTGAGAAGAATGAGCTCAGGGATGAAAAGCAGAGGCTGAAGGCAGAAAAAGAGACAATAGAGCAACAATTGAAGAACATGAATTCTCAGCCCAGCTTCCTGCCTCCAGCGCCTGCAATCCCAGCTGCATTTGCTGCTCAAGGGCAAGCTCCTGGCAACAAGTTGGTGCCTTTCATTACCTACCCCGGAGTGGCAATGTGGCAGTTCATGCCTCCTGCTGCAGTGGACACCTCGCAGGATCACGTTCTCCGCCCGCCCGTTGCTTAA 711 47.96 MVSPETTNWLYDYGVIEDIPVHDGNFSVSNSGFSWPVQALNGSSNVSMEIDESLINSDCPQKSCLKKRVRSESSSVSSSKACREKLRRDRLNDKFLELGSILDPGRPPKTDKAAILVDAVRMVTQLQGEAQKLKDSNLSLQEKIKELKAEKNELRDEKQRLKAEKETIEQQLKNMNSQPSFLPPAPAIPAAFAAQGQAPGNKLVPFITYPGVAMWQFMPPAAVDTSQDHVLRPPVA 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4355988 4358811 - Bma010778.1 Bma14g00357 94338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00357 236 PANTHER TRANSCRIPTION FACTOR ILR3 1 236 - -
Bma14g00357 236 CDD bHLH_AtILR3_like 80 155 - -
Bma14g00357 236 SMART finulus 81 132 IPR011598 GO:0046983
Bma14g00357 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 145 IPR036638 GO:0046983
Bma14g00357 236 Coils Coil 123 178 - -
Bma14g00357 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Bma14g00357 236 PANTHER BHLH TRANSCRIPTION FACTOR 1 236 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Bma14g00357 236 Pfam Helix-loop-helix DNA-binding domain 79 127 IPR011598 GO:0046983
Bma14g00357 236 Gene3D - 78 155 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma13g01026 Bma14g00357 CCT
Bma13g01026 Bma14g00357 ECH
Bma07g01316 Bma14g00357 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00993 Bma-Chr12:41998013 Bma14g00357 Bma-Chr14:4355988 9.37E-10 dispersed
Bma12g01000 Bma-Chr12:42086034 Bma14g00357 Bma-Chr14:4355988 9.37E-10 dispersed
Bma13g01063 Bma-Chr13:43338811 Bma14g00357 Bma-Chr14:4355988 3.79E-80 dispersed
Bma02g01337 Bma-Chr2:55860529 Bma14g00357 Bma-Chr14:4355988 4.50E-39 transposed
Bma03g00960 Bma-Chr3:10194011 Bma14g00357 Bma-Chr14:4355988 8.44E-16 transposed
Bma05g00413 Bma-Chr5:12971497 Bma14g00357 Bma-Chr14:4355988 8.97E-17 transposed
Bma12g00554 Bma-Chr12:23076784 Bma14g00357 Bma-Chr14:4355988 4.80E-21 transposed
Bma13g01026 Bma-Chr13:42866561 Bma14g00357 Bma-Chr14:4355988 3.74E-121 wgd
Bma14g00357 Bma-Chr14:4355988 Bma07g01316 Bma-Chr7:48705388 4.20E-118 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58306 PF00010 HLH 5.70E-10 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00357 - - jre:108993453 365.925