Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00370 ATGTCTTCCACCGTCTCAAACGGTCCATCTTCTCCAAATGTTGTTCGACAAACAGCCGCATACGAGCCGAGTATTTGGGGAGATCGCTTTCTCAACTACGAGCTCGAACCATGGGAAAAGCATGCCCTTATGGAGGAGGAGGCAGGAGAATTGAAGAAGGCTGTGAAGAAGATGCTGTCTGAGAGTCCTAGTGATTCTTTTGCTCAACTTAAACTAATTGATGATATTCAACGGCTCGGCGTCGAGTACCATTTTGAAAGAGAGATCGAATATGCTTTGGAATGCATATATGCTGCCTATCTCAATGAAGGCCTCAAAGATAATGTCAGCCTCCATCACGTTTCTCTGCGTTTCCGATTGCTCAGACAACAAGGACTCAACATTTCCTACACTTTGAACCCATTGAGAGCTGAAAAAGGAAAGTTTAAAGAGCTCTTAGCCACCGACGTGGAAGCATTGCTAAGCCTCTATGAGGCTTCATTTTTGGGTTTGCAAGAAGAAACTTTGCTGGATGAGGCTCTTGTCTTCTCAACTACTCACCTTGAAGTCTTATCAAAGCAACAAATCTACCCTCTTTCAGACATGATATCTAGAGCCCTTGACTGTCCGTTGTGGAAGAGGACAGTGAGAGTGAATGCTGCCCTTTTCATCTCTATCTATAAAGACCTTCCTTCCCATAATGAAATCTTGCTAAGATTTGCGAAGCTTGATTATAATCTACTTCAATCTCTACACAAGAAGGAGCTCAGCGACTTACGCAAATGGGGAAGAAGCCTGGACTTTGCTAGAAAACTGCCATTTGCAAGGGATAGGATCGTAGAGTGTTGTTATTGGATATTTGGAGCTCACTTTGAACCTCAATACTTTCTATCGAGGAGAATGATCAAGCAAGTCGGACACTACTACGAAGAAGCGAAATGGCTGGACAAGAAATATAAGCCAACATTTGATGAATACATAGGCTTAGCTTCAAATTCAATCGGCCATGCTATGCTTTCCGCGATCTCTTTTGCCGGAATGAATCCTGAGGTTGCTAAGGAAGATGACTTTAAATGGCTAGCCAGTGAACCCAAGTTTCTTAAAGCTGTGGAGTTGATTTGCAGGCTACTTGATGACCTAGTTTCCAGCAAGCTGGAGAAGCAACGAGGGCACATACCAACGTCTGTGGAATGCTATACAAACCAGTACAAAGTATCTGAAGACGAAGCAATCGTTGTATTAAAGAAGAAGATTTCAGATTCATGGAAGGATTTAAACAAAGAGATTATGAAGCCAACAGCTGTGTCGAGGCCTCTTTTTACTAGGGTTCTTCATCTGGTTCGAGCTATGGAGGACATATATAAAAAAGAAGACTCCTATACCAATGTCGGAAAAGCACTTCAAGACAGGGTTTCGGCCATGTTCGCCGACGCATTTCCTCTGTGA 1425 43.16 MSSTVSNGPSSPNVVRQTAAYEPSIWGDRFLNYELEPWEKHALMEEEAGELKKAVKKMLSESPSDSFAQLKLIDDIQRLGVEYHFEREIEYALECIYAAYLNEGLKDNVSLHHVSLRFRLLRQQGLNISYTLNPLRAEKGKFKELLATDVEALLSLYEASFLGLQEETLLDEALVFSTTHLEVLSKQQIYPLSDMISRALDCPLWKRTVRVNAALFISIYKDLPSHNEILLRFAKLDYNLLQSLHKKELSDLRKWGRSLDFARKLPFARDRIVECCYWIFGAHFEPQYFLSRRMIKQVGHYYEEAKWLDKKYKPTFDEYIGLASNSIGHAMLSAISFAGMNPEVAKEDDFKWLASEPKFLKAVELICRLLDDLVSSKLEKQRGHIPTSVECYTNQYKVSEDEAIVVLKKKISDSWKDLNKEIMKPTAVSRPLFTRVLHLVRAMEDIYKKEDSYTNVGKALQDRVSAMFADAFPL 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4444240 4446686 + Bma010791.1 Bma14g00370 94351

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00370 474 Pfam Terpene synthase, N-terminal domain 25 200 IPR001906 GO:0010333|GO:0016829
Bma14g00370 474 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 23 223 IPR008930 -
Bma14g00370 474 Coils Coil 41 61 - -
Bma14g00370 474 SUPERFAMILY Terpenoid synthases 226 473 IPR008949 -
Bma14g00370 474 Gene3D Farnesyl Diphosphate Synthase 296 472 IPR008949 -
Bma14g00370 474 Pfam Terpene synthase family, metal binding domain 297 417 IPR005630 GO:0000287|GO:0010333|GO:0016829
Bma14g00370 474 CDD Terpene_cyclase_plant_C1 16 470 IPR044814 GO:0010333|GO:0016102
Bma14g00370 474 Gene3D - 26 240 IPR036965 GO:0010333|GO:0016829
Bma14g00370 474 PANTHER OS04G0344100 PROTEIN-RELATED 13 298 - -
Bma14g00370 474 PANTHER OS04G0344100 PROTEIN-RELATED 298 463 - -
Bma14g00370 474 Gene3D Farnesyl Diphosphate Synthase 241 295 IPR008949 -
Bma14g00370 474 PANTHER TERPENE SYNTHASE 2-RELATED 13 298 - -
Bma14g00370 474 PANTHER TERPENE SYNTHASE 2-RELATED 298 463 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00370 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] - cit:102614537 338.191
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g01101 Bma-Chr10:33610360 Bma14g00370 Bma-Chr14:4444240 6.64E-82 dispersed
Bma14g00166 Bma-Chr14:2233841 Bma14g00370 Bma-Chr14:4444240 1.00E-52 dispersed
Bma14g00370 Bma-Chr14:4444240 Bma13g00763 Bma-Chr13:25265001 1.99E-30 dispersed
Bma14g00370 Bma-Chr14:4444240 Bma14g00684 Bma-Chr14:7428048 2.12E-49 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g339 . . . . . . . . . . . . . . . Cpe06g00729 . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00753 . . Bpe03g00818 . Bma14g00370 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013164 2 0 21 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00370 Bma_Chr14 FPKM 4.684729 6.384074 0.0 0.0 2.444592 2.164301 2.155872 0.0 0.0 0.0