Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00379 ATGGGTGTCTCAGGGAAATGGATAAAAGCACTGGTTGGTTTTAAAAAATCGGAAAAGTCGCGATCTTCAGAAAAAGATCACAACGTGGGTACCTCCACACCTGGGAGTAAGATCCGACATCGTAGAAAGCACTCTCTCGAGTTTGATGCGGATAATCTTCAGTCTGAAATGGATCTAGATAGCACCTCATTAGTTGAGGATGCTAATGGTCATACTGATCGATATCCTGGTGGTTTGCCTTCAAATTCACTTCAGTTACTTGACATTTCACAGAGTCCTAAGAATGAAAGAGAAGAGTGGGCTGCCACACGAATCCAAACAACCTTTCGAAGATTTCTGGCTAGGAGAGCTCTCCGAGCTTTGAAAGGATTAGTGAGACTTCAAGCTCTTGTCAGGGGTCATGCCGTCAGAAAGCAAGCTGCAATAACACTTCGATGTATGCAAGCTTTAGTGAGAGTTCAGGCTCGGGTCAGAGCAAGGCACGTTCGTCTCGCATTAGAAAGTGAAACATCTCAACAAAAGCGTCAACAACAACTTGAAAATCAGGCTCGTGTTAGAGAAATAGAGGTAAGGAAGGTAGCATTCCTTTATTACCGAAGATGGAAGAAAAACACTACTCATGGATCTACTATGGTTATGATGCAGGAAGGGTGGTGTGACAGTGTAGGATCTGTTGAAGAAATTCAAGCCAAGTTGTTAAAGAGGCAGGAGGCTGCAACCAAGCGTGAGAGAGCCATGGCATATGCTCTGGCTCATCAGTGGCAAGCAGGATCAAGACAGCAGACTGCTCAATCAGGGTTTGAACCAGATAAGAGCAGCTGGGGTTGGAATTGGTTGGAAAGATGGATGGCCGTCCGTCCTTGGGAGAATCGTTTTCTTGACATTAATCTCCGAGATGGAGTGATGATACGAGAGGATGAATCGGCCGAGGCTAGACATAGCAGTGGATCTCAGTCAAAAGCTAGTGGAAAGAAGCCTCATTTTTCAGTTGTCTCAAACCAGAAAACCGCCCCTTCTAATTCCGAGGGCTCTGATTCTTCTCCCAGTAAATCAGCAGGCCTGCTAGAGTCAATGGCGCCCCAGAAGCCAAAGTCTAAGCCTTCTTATGAAAAGACAGCTGAAGAAGTCAAAAAACCAGTTGTTAGATCAAGAGGCCTCAGCAATCCGAAAGAGCGATCGACTCCGTTAGATAAACCGGCAGAAAAGCGGCTATCTCTGCCTAATACCAGTGAGCTCTCTCTCTCTCTCTTCCTTGCTAGAACGCTCAAGTTTAAAATAAAACTTTCTGAACTGGCTTTCTTCAGTTATAGCAATTAG 1317 45.18 MGVSGKWIKALVGFKKSEKSRSSEKDHNVGTSTPGSKIRHRRKHSLEFDADNLQSEMDLDSTSLVEDANGHTDRYPGGLPSNSLQLLDISQSPKNEREEWAATRIQTTFRRFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARHVRLALESETSQQKRQQQLENQARVREIEVRKVAFLYYRRWKKNTTHGSTMVMMQEGWCDSVGSVEEIQAKLLKRQEAATKRERAMAYALAHQWQAGSRQQTAQSGFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMIREDESAEARHSSGSQSKASGKKPHFSVVSNQKTAPSNSEGSDSSPSKSAGLLESMAPQKPKSKPSYEKTAEEVKKPVVRSRGLSNPKERSTPLDKPAEKRLSLPNTSELSLSLFLARTLKFKIKLSELAFFSYSN 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4537470 4540190 + Bma010802.2 Bma14g00379 94360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00379 438 Pfam IQ calmodulin-binding motif 100 119 IPR000048 GO:0005515
Bma14g00379 438 MobiDBLite consensus disorder prediction 367 385 - -
Bma14g00379 438 ProSiteProfiles IQ motif profile. 122 149 IPR000048 GO:0005515
Bma14g00379 438 MobiDBLite consensus disorder prediction 15 44 - -
Bma14g00379 438 MobiDBLite consensus disorder prediction 314 354 - -
Bma14g00379 438 PANTHER IQ-DOMAIN 5-RELATED 180 410 - -
Bma14g00379 438 PANTHER IQ-DOMAIN 5-RELATED 2 172 - -
Bma14g00379 438 Gene3D - 95 149 - -
Bma14g00379 438 PANTHER IQ-DOMAIN 5-RELATED 180 410 - -
Bma14g00379 438 PANTHER IQ-DOMAIN 5-RELATED 2 172 - -
Bma14g00379 438 ProSiteProfiles IQ motif profile. 98 126 IPR000048 GO:0005515
Bma14g00379 438 MobiDBLite consensus disorder prediction 308 404 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00379 - - - tcc:18590191 459.144
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma11g00338 Bma14g00379 CCT
Bma07g01423 Bma14g00379 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02209 Bma-Chr1:79004323 Bma14g00379 Bma-Chr14:4537470 2.95E-50 dispersed
Bma11g01010 Bma-Chr11:45765929 Bma14g00379 Bma-Chr14:4537470 6.25E-32 dispersed
Bma14g00379 Bma-Chr14:4537470 Bma08g01144 Bma-Chr8:50511458 2.64E-33 dispersed
Bma14g02027 Bma-Chr14:43594429 Bma14g00379 Bma-Chr14:4537470 2.01E-15 transposed
Bma14g00379 Bma-Chr14:4537470 Bma07g01423 Bma-Chr7:50036173 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g808 Blo03g01027 . . . . . Bma14g00379 Bma07g01423 Cmo10g00895 Cmo11g00931 Cma10g00857 . . . . . Cpe18g00165 . . . . . . . . . . . . . . . Cone5ag1312 Cone18ag0162 Cone11ag1428 Lsi06g00645 . . . . . . Bda09g00275 . Bpe11g00883 . Bma11g00338 . . . Cma11g00912 . . . . . . . . . . . . Cla03g01384 Cam03g1463 Cec03g1500 Cco03g1495 Clacu03g1486 Cmu03g2044 Cre03g1715 . Csa01g03281 Chy02g01601 Cme02g00846
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma04g01643 . 47 376 IQD Protein Family AT5G03040 57.2 3.0e-87 319.3
Bma10g00020 . 1 238 IQD Protein Family AT5G03040 56.3 1.1e-57 221.1
Bma08g00947 CCT,ECH 1 469 IQD Protein Family AT3G52290 51.2 1.1e-91 334.0
Bma07g01423 BCT,CCT 1 387 IQD Protein Family AT3G22190 58.7 2.0e-98 356.3
Bma14g00379 BCT,CCT 1 391 IQD Protein Family AT3G22190 55.0 5.2e-86 315.1
Bma01g02209 . 1 433 IQD Protein Family AT2G26180 57.3 1.2e-114 410.2
Bma11g01010 . 1 274 IQD Protein Family AT2G33990 52.6 8.6e-63 237.3
Bma10g00484 . 1 133 IQD Protein Family AT3G15050 63.2 6.7e-44 174.5
Bma02g01259 . 247 675 IQD Protein Family AT4G00820 57.3 2.6e-106 382.9
Bma04g00927 . 1 231 IQD Protein Family AT4G00820 57.3 3.6e-52 203.0
Bma02g01259 . 254 675 IQD Protein Family AT1G01110 55.1 1.3e-102 370.5
Bma04g00927 . 1 231 IQD Protein Family AT1G01110 53.1 8.8e-43 171.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004215 1 3 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00379 Bma_Chr14 FPKM 2.278607 2.396144 2.11212 2.197913 0.0 0.0 0.0 0.0 0.0 0.0