Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00429 ATGGCTCCGATTCCGTCCGAGAATGGAGTCGAAGGAGACGACGAGAGGGAGGAGGATGAAGAGGAGGAAGACGACGAGGAATTAGAAGAGGAGGAGGAAGAGGAGGAGGAGGAGGGAGAGCCGAGGCTTAAGTATCAGAGGATGGGGGGAAGTATACCTTCGCTGCTGGCCAGCGATGCGGCATCCTGCGTTGCGGTTAAAGAATTTCCTGCTCACACTGCTGTAGTTAATGACCTTAGCTTTGACTTAGAAGGTGAATTTATAGGAAGTTGCGCCGATGATGGATCTGTTGTAATAAACAGCCTTTTCACTGATGAGAAAATGAAATTCGAGTATCACCGCCCGATGAAGGCCATTGCGGTAGATCCAGATTATTCAAGAAAAGCATCTAGAAGATTCGTAACGGGTGGTTTAGCTGGTCATTTATATTTAAATTCAAAAAAATGGCTTGGTTATCGAGATCAGGTTTTGCATTCTGGTGAAGGTCCAATACATGCAATCAAATGGAGAACAAGCCTAATTGCTTGGGCAAATGATGAAGGCGTGAAAGTCTATGATGCTGCCAATGACCAACGTATAACATTTATTGAGAGACCACGAGGAAGCCCACGGCCAGAACTCTTGCTCCCTCAATTAGTTTGGCAGGGTGATACTCTTTTGGTTATTGGATGGGGAACATCAGTGAAGATTGCTTCCGTAAGAACAAATCAGAATAAAGCAGCAACAAATGGGACTTATAAAAATGTTCCTATGTCTAGTATGAACCAGGTGGACATTGTGGCGTCTTTTCAAACCAACTATTTCATTACAGGAATTGCTCCATTTGGTGATTCTTTGGTTGTTCTCGCCTATATTCCTGGCGAAGAAGACAGTGAAAAGGATTTTAGTAGTACTGCTCCATCTAGGCAGGGAAATGCACAAAGACCAGAAGTACGTATAGTGACTTGGAACAATGAGGAACTCTCAACAGATGCTCTACCTGTACATGGTTTTGAGCATTATAAGTCAAAGGATTATTCTCTGGCACATGCTCCTTTCTCAGGTAGCAGCTATGCTGGCGGTCAGTGGGCTGCTGGTGATGAGCCATTATACTATGTCGTATCCCCAAAAGATGTAGTAATTGCCAAACCTAGGGATGCTGAAGATCATATTGCTTGGCTTCTTGAACACGGTTGGCATGAAAAAGCATTGGCAGCTGTCGAGGCAGGTCAGGGTCGTAGTGAGCTCCTTGATGAGGTTGGATCTAGGTACCTTGATCATTTGATTGTAGAAAGGAAATACGCTGAAGCTGCATCTTTGTGTCCCAAATTATTACGCGGATCTGCCTCTGCTTGGGAGAGATGGGTTTTTCATTTTGCTCATCTCCGCCAGCTTCCTGTGTTGGTTCCATTTATACCAACAAAAAACCCTACACTGCGTGATACTGCCTATGAGGTTGCCCTTGTAGCTCTTGCTACAAACCCAGTGTTTCATAAAGATCTATTATCAACCGTAAAGACTTGGCCAGCGGTAATTTATTCTGTGTTGCCTGTTATCTCGGCCATAGAACCTCAGCTTAAAACTTCATCAATGACTGATGCACTTAAAGAGGCATTGGCAGAGTTATATGTAATTGACGGGCAATATGAGAAGGCTTTTTCCTTCTATGCAGATCTTCTGAAGCCAGATATATTTGAGTTCATTGAAAAACACAATTTACATGAAGCCATTCGTGAGAAGTCAGGTGAACTTTTAAATCTGGATCCATTCCTGATTTTTGAAAATAAATGTTTTTTCATGAAGCTTTTTGGTTTTGTTGTTCAACTTATGATGCTAGACTACAAACGTGCTGTTCCATTACTAATCCAAAACAGGGATATAATTACTCCCGAAGATGTTGTTTCACAACTGCTTGATGCGAAGAATACCTGTAATTTCAGATATTTTTTACATATATATCTGCATTCATTATTTGAAGTTAGCCCGCATGCTGGAAAGGAATTCCATGATATGCAGGTAGAACTTTATGCAGAGTTTGATTCCAAGATGCTGCTTCCATTTCTTCGTAGTAGTCAACATTATACACTTGAGAAGGCATATGAAGTCTGTATCAAAAAAGATCTCTTAAGGGAGCAAGTTTTCATTCTTGGGCGAATGGGAAATTCAAAACAAGCCCTTGCAGTGATCATAAATAAATTAGGAGATATAGAGGAGGCTGTTGAGTTTGTTAGTATGCAACACGATGACGACCTATGGGAAGAATTGATAAAGCAATGTCTTCATAAGCCTGAAATGGTTGGCATGCTTTTGGAACACACAGTTGGCAATCTTGATCCTCTATATATAGTGAACATTGTACCAAATGGCTTGGAGATTCCTCGAAGAGAACGCAAATTCACTGTGACAATTACCTATGCTTCAAAACCAGATATACATCATCTACAACAGTTTATTCGTGGTAGACAGTTGGATGTTCCTCAGGAAGCAATACAAATGCTTGATGTTGTCCTAAGAGCAGCACCATCCGCAAACTATACAGTTGTTGGTCGATCCTTTTTCTCGTTACAATTGGGACCTAGGGGTGAACTTGGGGATGGAGTGGAATATTGGAAGGGGTATTATCAGAGCCTTCGACCAACCCAGATGGGACTGTCCCTGAACATTGATGTCTCGGCACGGTCCTTCTACGAACAAATCCTGGTGACTGAGTTTGTTGCAAAATATGTTAATCTTAGAGATTTTGCAAGGCCATTATCTGACCAAGATCGTCTTAAGATTAAAAAAGTTCTTAGAGGAGTTAAGGTGCGCATCACTTACAGCGAACATGCAAGAACATATAAAGTTACTGGAATCACCACACAATCAATTGGCCAACTCGGGTTTTCTCTTGGCGATGATACAAAAAAAACATCAATTTTGCAATACTTCCGAGATAGATACGGCATTGCCTTGAAACATCTTACTTTGCCAGCATTGCAAGCTGGAAATGATCCATCAAATCCTATTTACTTGCCTATGGAGCTATGTGAGATTGTGGGTGGGCAAAGATATACGAAGAAGTTAAATGAACGCCAAGTTACTGCCCTTTTAAGAGCAACATGTCAGCGCCCACCACAACGGGAAGATGGTATAAAGAAGATAGTTCAGAACAATAAGTACAGAGAAGACAAGCTTGTAAATGAAGAGTTTGAGATTAAAGTGAGAGAGGACCTGACTCCCGTAGATGCTCGTGTCCTACCTTCTCCAATGCTTAAATATCACGACACGGGTAAAGAAACAAGAGTAGACCCTAAGATGGGACAATGGAATATGATCAACAAGAAAATGGTAAACGGAGGTAAAGTAGAGTGGTGGACCTGTGTAAACTTCTCTTCGCGTATAAATAGAAACTTGCCTTTCGATTTCTGTCAGCAATTGATACAGATGTGCAATAGTAAAGGAATGGATTTCAACCCAACTCCATTGATTCCAATAACATTCGCCCAGTCTTCTGAAATTGAAAGGACACTTGGAGAAGTTAACAAAAAATCACAAGAAAGACTGAAAAATCTGACGCGGGATGGTGATCGATTACAATTGTTAATTATTATTTTACCTGATTTTAGTGGATCTTATGGAAAGATAAAACGTGTGTGTGAAACTGAACTTGGAATAGTTTCTCAATGTTGTCAACCAAAGCAAGCCTCAAAGATGAGTATACAGTATTTTGAAAATGTTGCACTTAAAATCAATGTGAAGGTGGGAGGAAGAAATAGTGTATTAAATGATGCAATTCTCAGAAAAATTCCTTTTGTTTCTGATATGCCGACGATTGTCTTTGGTGCTGATGTGACGCATCCCACGCCAGGGGAAGACTCGAGCCCGTCCATAGCGGCTGTCGTCGCCTCCATGGATTGGCCGGAAGTTACTAAGTATAAAGGACTTATTTCTTCTCAATCACATCGAGAAGAAATTATTCAAGATCTATACAAGTTAGTCCAAGATCCTCAACGAGGATTAGTGCATGGTGGAATGATCAAGGAACTTTTAGTTTCTTTTTATAAATCTACTGGTCTAAAGCCCCACAGAATTATATTTTACAGAGATGGAGTAAGTGAAGGGCAATTCAATCAGGTTTTGTTATATGAGATGGATGCCATCCGAAAGGCATGTGCCGCACTACAGGAAGGTTATCAACCTCCCGTTACTTTTATTGTGGTGCAAAAGAGACACCATACACGTCTATTTCCGGCTGATAATCGCAACATTGATCGAAGTGGAAATATACTACCAGGCACCGTCGTAGACACAAAAATTTGTCATCCCACGGAATTTGATTTTTACCTCAACAGCCATGCTGGCATTCAGGGAACAAGCCGACCTGCACATTATCATGTGTTGTACGACGAGAACAAATTTACTGCAGATTCGCTGCAAATGCTAACAAATAACTTGTGTTACACGTATTCGAGGTGCACTAGATCTGTTTCCATAGTGCCTCCTGCTTATTATGCGCATTTAGTCGCTTTTAGAGCACGATATTATATCGAGGGGGAGTATTCCGAAAGTGGGTCAACAAGCGAAGGCAGGAGTGGGGAGGTCCGGCCTCTCCCGGTTGTCAAGGACAACGTGAAAGAAGTGATGTTCTATTGCTGA 4614 41.48 MAPIPSENGVEGDDEREEDEEEEDDEELEEEEEEEEEEGEPRLKYQRMGGSIPSLLASDAASCVAVKEFPAHTAVVNDLSFDLEGEFIGSCADDGSVVINSLFTDEKMKFEYHRPMKAIAVDPDYSRKASRRFVTGGLAGHLYLNSKKWLGYRDQVLHSGEGPIHAIKWRTSLIAWANDEGVKVYDAANDQRITFIERPRGSPRPELLLPQLVWQGDTLLVIGWGTSVKIASVRTNQNKAATNGTYKNVPMSSMNQVDIVASFQTNYFITGIAPFGDSLVVLAYIPGEEDSEKDFSSTAPSRQGNAQRPEVRIVTWNNEELSTDALPVHGFEHYKSKDYSLAHAPFSGSSYAGGQWAAGDEPLYYVVSPKDVVIAKPRDAEDHIAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPFIPTKNPTLRDTAYEVALVALATNPVFHKDLLSTVKTWPAVIYSVLPVISAIEPQLKTSSMTDALKEALAELYVIDGQYEKAFSFYADLLKPDIFEFIEKHNLHEAIREKSGELLNLDPFLIFENKCFFMKLFGFVVQLMMLDYKRAVPLLIQNRDIITPEDVVSQLLDAKNTCNFRYFLHIYLHSLFEVSPHAGKEFHDMQVELYAEFDSKMLLPFLRSSQHYTLEKAYEVCIKKDLLREQVFILGRMGNSKQALAVIINKLGDIEEAVEFVSMQHDDDLWEELIKQCLHKPEMVGMLLEHTVGNLDPLYIVNIVPNGLEIPRRERKFTVTITYASKPDIHHLQQFIRGRQLDVPQEAIQMLDVVLRAAPSANYTVVGRSFFSLQLGPRGELGDGVEYWKGYYQSLRPTQMGLSLNIDVSARSFYEQILVTEFVAKYVNLRDFARPLSDQDRLKIKKVLRGVKVRITYSEHARTYKVTGITTQSIGQLGFSLGDDTKKTSILQYFRDRYGIALKHLTLPALQAGNDPSNPIYLPMELCEIVGGQRYTKKLNERQVTALLRATCQRPPQREDGIKKIVQNNKYREDKLVNEEFEIKVREDLTPVDARVLPSPMLKYHDTGKETRVDPKMGQWNMINKKMVNGGKVEWWTCVNFSSRINRNLPFDFCQQLIQMCNSKGMDFNPTPLIPITFAQSSEIERTLGEVNKKSQERLKNLTRDGDRLQLLIIILPDFSGSYGKIKRVCETELGIVSQCCQPKQASKMSIQYFENVALKINVKVGGRNSVLNDAILRKIPFVSDMPTIVFGADVTHPTPGEDSSPSIAAVVASMDWPEVTKYKGLISSQSHREEIIQDLYKLVQDPQRGLVHGGMIKELLVSFYKSTGLKPHRIIFYRDGVSEGQFNQVLLYEMDAIRKACAALQEGYQPPVTFIVVQKRHHTRLFPADNRNIDRSGNILPGTVVDTKICHPTEFDFYLNSHAGIQGTSRPAHYHVLYDENKFTADSLQMLTNNLCYTYSRCTRSVSIVPPAYYAHLVAFRARYYIEGEYSESGSTSEGRSGEVRPLPVVKDNVKEVMFYC 1537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5006971 5033120 - Bma010858.4 Bma14g00429 94410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00429 1537 SMART DUF1785_2 839 891 IPR014811 -
Bma14g00429 1537 CDD Piwi_ago-like 1055 1502 IPR045246 -
Bma14g00429 1537 SMART WD40_4 150 186 IPR001680 GO:0005515
Bma14g00429 1537 SMART WD40_4 62 101 IPR001680 GO:0005515
Bma14g00429 1537 Pfam Argonaute linker 1 domain 841 890 IPR014811 -
Bma14g00429 1537 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 41 HOMOLOG 66 581 - -
Bma14g00429 1537 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 41 HOMOLOG 1 68 - -
Bma14g00429 1537 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 41 HOMOLOG 585 806 - -
Bma14g00429 1537 Gene3D paz domain 886 1010 - -
Bma14g00429 1537 SMART CLH_2 614 761 IPR000547 GO:0006886|GO:0016192
Bma14g00429 1537 Coils Coil 14 38 - -
Bma14g00429 1537 MobiDBLite consensus disorder prediction 11 39 - -
Bma14g00429 1537 ProSiteProfiles PAZ domain profile. 892 1006 IPR003100 GO:0005515
Bma14g00429 1537 MobiDBLite consensus disorder prediction 1 46 - -
Bma14g00429 1537 SMART PAZ_2_a_3 902 1026 IPR003100 GO:0005515
Bma14g00429 1537 PANTHER VACUOLAR PROTEIN SORTING VPS41 1 68 IPR045111 GO:0006623
Bma14g00429 1537 Coils Coil 1167 1187 - -
Bma14g00429 1537 Pfam PAZ domain 918 1022 IPR003100 GO:0005515
Bma14g00429 1537 ProSiteProfiles Piwi domain profile. 1186 1503 IPR003165 GO:0003676
Bma14g00429 1537 PANTHER VACUOLAR PROTEIN SORTING VPS41 66 581 IPR045111 GO:0006623
Bma14g00429 1537 Pfam Argonaute linker 2 domain 1032 1079 IPR032472 -
Bma14g00429 1537 Pfam Mid domain of argonaute 1090 1168 IPR032473 -
Bma14g00429 1537 Pfam Region in Clathrin and VPS 623 757 IPR000547 GO:0006886|GO:0016192
Bma14g00429 1537 Gene3D - 1255 1537 IPR036397 GO:0003676
Bma14g00429 1537 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 614 761 IPR000547 GO:0006886|GO:0016192
Bma14g00429 1537 Gene3D - 48 282 IPR015943 GO:0005515
Bma14g00429 1537 SMART Piwi_a_2 1186 1503 IPR003165 GO:0003676
Bma14g00429 1537 Pfam N-terminal domain of argonaute 786 830 IPR032474 -
Bma14g00429 1537 SUPERFAMILY WD40 repeat-like 62 245 IPR036322 GO:0005515
Bma14g00429 1537 SUPERFAMILY Ribonuclease H-like 1175 1503 IPR012337 -
Bma14g00429 1537 Gene3D Tetratricopeptide repeat domain 623 838 IPR011990 GO:0005515
Bma14g00429 1537 CDD PAZ_argonaute_like 894 1005 - -
Bma14g00429 1537 Gene3D - 1071 1249 - -
Bma14g00429 1537 SUPERFAMILY PAZ domain 888 1046 IPR036085 GO:0005515
Bma14g00429 1537 Pfam Piwi domain 1188 1502 IPR003165 GO:0003676
Bma14g00429 1537 PANTHER VACUOLAR PROTEIN SORTING VPS41 585 806 IPR045111 GO:0006623
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma07g00301 Bma14g00429 CCT
Bma11g00328 Bma14g00429 CCT
Bma07g00301 Bma14g00429 ECH
Bma11g00328 Bma14g00429 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00975 Bma-Chr8:48792984 Bma14g00429 Bma-Chr14:5006971 1.19E-72 dispersed
Bma11g00328 Bma-Chr11:3073852 Bma14g00429 Bma-Chr14:5006971 8.02E-133 dispersed
Bma12g01262 Bma-Chr12:45660405 Bma14g00429 Bma-Chr14:5006971 5.48E-129 dispersed
Bma14g00429 Bma-Chr14:5006971 Bma15g00144 Bma-Chr15:1501899 8.46E-168 dispersed
Bma14g00429 Bma-Chr14:5006971 Bma08g00120 Bma-Chr8:1483433 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00429 K20184 - qsu:111993745 1307.35