Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00439 ATGCAGCTCCAAGGTTTTGAAGTGGAGCTTCATGATTTCATCGAGAATTCTGATTTCGACCAGTTCGTCGATATAATCAGGGGAGAACACGAAAACCCACTTCTCAATTTCGATCGGGATCTCATCACAAATGGGTGTTGTTTAGATGATCAGTTTGGTAAATCAAACGGAAGAGACGTCTTGGACTTCAATGTCGTTGCTGGATCAGACAGCCCAGAGTTCATGATGTTTAACAGATCGGAGAAAATTGAAGACGGGGAAGCGATCGGAGGAGGTGAAGAAGACGATGGAGAGGATTCTTCTGCTACAACTACGACGGGGACGAATAAAACGACGACGAAGGGGGGTAAGGTTGACAGATCGAGAACATTGATTTCAGAGAGAAGAAGAAGAGGAAGGATGAAAGAGAAGCTTTATGCATTGCGTTCTTTGGTTCCAAACATAACCAAGATGGATAAAGCCTCCATTGTCGGAGATGCTGTATTATACGTACAAGAGCTGCAAATGCAGGCGAAAAAACTCAAGACTGAGATAAAAGGCATCGAAGCATCAAGGGAAAGAGCAGACAGATATCAAGTAACTCAAAACAACCGTAAGAAGATTCATCAACCTCCTAACTCGACGTGCTTGGCTTCAAAGAAAATCATACAGATGGACATTTTTCAAGTAGAGGAAAGAGGGTTTTACTTGAGAATATTGTGCGACAAAGGTAATGGAGTCGCCTTGTCTCTTTATAAAGTTCTTGAATCCATGATGGGTTTTGATGTTCAGAGCTCGAATTTGATGACGACTGCTGAAAGATTTGTTTTAACTGCAACTCTCAATGTGATGAAAGATTGCGAGCAGGAGATGAATTTGCCAAAGTTGAAGCTTTGGTTGACTGGAGCTCTTCTTAGCCATGGATTTGAGTTTTAA 915 41.97 MQLQGFEVELHDFIENSDFDQFVDIIRGEHENPLLNFDRDLITNGCCLDDQFGKSNGRDVLDFNVVAGSDSPEFMMFNRSEKIEDGEAIGGGEEDDGEDSSATTTTGTNKTTTKGGKVDRSRTLISERRRRGRMKEKLYALRSLVPNITKMDKASIVGDAVLYVQELQMQAKKLKTEIKGIEASRERADRYQVTQNNRKKIHQPPNSTCLASKKIIQMDIFQVEERGFYLRILCDKGNGVALSLYKVLESMMGFDVQSSNLMTTAERFVLTATLNVMKDCEQEMNLPKLKLWLTGALLSHGFEF 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5095538 5097583 - Bma010868.1 Bma14g00439 94420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00439 304 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 118 167 IPR011598 GO:0046983
Bma14g00439 304 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 119 180 IPR036638 GO:0046983
Bma14g00439 304 Coils Coil 164 184 - -
Bma14g00439 304 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 79 303 - -
Bma14g00439 304 SMART finulus 124 173 IPR011598 GO:0046983
Bma14g00439 304 PANTHER TRANSCRIPTION FACTOR FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR 79 303 - -
Bma14g00439 304 Gene3D - 110 184 IPR036638 GO:0046983
Bma14g00439 304 MobiDBLite consensus disorder prediction 87 120 - -
Bma14g00439 304 Pfam Helix-loop-helix DNA-binding domain 123 168 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma07g00170 Bma14g00439 CCT
Bma11g00199 Bma14g00439 CCT
Bma07g01474 Bma14g00439 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g00439 Bma-Chr14:5095538 Bma14g01796 Bma-Chr14:38542509 3.33E-18 dispersed
Bma06g01028 Bma-Chr6:46986271 Bma14g00439 Bma-Chr14:5095538 3.56E-16 transposed
Bma11g00199 Bma-Chr11:1770220 Bma14g00439 Bma-Chr14:5095538 3.91E-106 wgd
Bma14g00439 Bma-Chr14:5095538 Bma07g01474 Bma-Chr7:50374715 5.00E-133 wgd
Bma14g00439 Bma-Chr14:5095538 Bma07g00170 Bma-Chr7:2274279 1.53E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58313 PF00010 HLH 3.80E-09 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00439 - - jre:109019270 296.589