Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma14g00470 | ATGGAGATCAGTGAAACAAATACTTCTACTTCATCAAACCCTGCAACTTCTTCATCGCCGGTATCATCGTCTTCTCCTTCACCTCCGGCGACTACTCCGGCCACGACCAGTCATGTAATTCTCAGTCCTTGCGCGGCGTGCAAGATTTTGCGGCGAAGATGCGCTGAGAAATGTGTACTGGCGCCGTACTTCCCTCCCACTGAGCCCGCGAAGTTCACCATAGCTCATCGAGTTTTTGGCGCCAGCAATATCATCAAGTTTCTTCAGGCATATCAAAGGGCAGACGCAGTTAGCAGCATGGTGTATGAAGCAAGTGCGAGAATAAGAGATCCAGTTTACGGATGTGCAGGCGCCATCTGCCAACTTCAGAAGCAAGTGAACGAGCTTCAAGCCGAATTAGCAAAAGCACAGGCCGAGCTCGTCAACATGCAGTGTCAACAGTCCAATCTCGTCTCTGTCATTTGCAGAGAGTTTTCTCAGTCATCTCAGCCATGGCCGAATGAGCATCAATCTCTTGATAATTTCATTCAAAACGACCCTCATTCGTACCTGACGAACAACCCAAGCTTATTTGAAGACGGGTCTTTGTGGGAGCCTCTGTGGACTTGA | 609 | 49.1 | MEISETNTSTSSNPATSSSPVSSSSPSPPATTPATTSHVILSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQAYQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVNELQAELAKAQAELVNMQCQQSNLVSVICREFSQSSQPWPNEHQSLDNFIQNDPHSYLTNNPSLFEDGSLWEPLWT | 202 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 5340036 | 5341115 | - | Bma010900.1 | Bma14g00470 | 94451 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma14g00470 | 202 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 28 | 201 | - | - | |
| Bma14g00470 | 202 | Coils | Coil | 119 | 146 | - | - | |
| Bma14g00470 | 202 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
| Bma14g00470 | 202 | Pfam | Lateral organ boundaries (LOB) domain | 43 | 137 | IPR004883 | - | |
| Bma14g00470 | 202 | ProSiteProfiles | LOB domain profile. | 42 | 140 | IPR004883 | - | |
| Bma14g00470 | 202 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 1 | 28 | 201 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma08g00958 | Bma-Chr8:48612668 | Bma14g00470 | Bma-Chr14:5340036 | 3.34E-73 | dispersed | |
| Bma14g00470 | Bma-Chr14:5340036 | Bma14g00879 | Bma-Chr14:9901680 | 4.97E-47 | dispersed | |
| Bma14g00470 | Bma-Chr14:5340036 | Bma03g00327 | Bma-Chr3:2448170 | 1.68E-69 | wgd | |
| Bma14g00470 | Bma-Chr14:5340036 | Bma08g00949 | Bma-Chr8:48484112 | 2.26E-73 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 58316 | PF03195 | LOB | 1.80E-37 | No_clan | Bma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma14g00470 | - | - | minc:123208287 | 249.595 |