Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00501 ATGGCGGAGGAGAAACGAGTTGTCGTACAGAGCCTGATCGAGGCAGTGAACGAGATTGCTTCTATCTCGGATTACAGGCACACTGTGAAGAAGGAGTATTGCAATTTAGCAAGGAGATTGAAGCTTCTGACTCCAATGTTCGAGGAAATCAGGGACAGCGGGGAGGCGCTCCCCGAGGAGACTCTGAAGGCTCTAGTTTCGTTAAAAGCAGCTCTGAAATCAGCTATAGAGTTGCTCAAATTCGGAAGCGAGGGAAGTAAGATTTACCTGGCTCTTGAAGTGGAGAATATTATGCACAAATTCCATGAGATAACAGCTCAGTTGGAGCAAGCTTTGAGCGGAATTTCCTATGATAATCTGGACGCATCTGATGAAGTTAAGGAGCAGGTTGAACTTGTTCTTGCCCAGTTTAGAAGAGCTAAAGGCAGGATTGATATGCCTGACGCACAGCTGCATGACGAGCTTGTATCACTATATCAGACGGTTACAGATCCATCTGTCGTACGGAGATTGGCTGAAAAATTGGATCTAACTGGAGTATCTGACCTTAAACAAGAATCACTGGCTTTGTCTGAGATGGCTATTGCCCGTGGTGATGACCCTGGAGAGACTTTTGAGAAGATGTTAATGCTCCTGAAGAAAATAAAAGATTTTGTATTGACAGAATACCCTGAAATGGATGATCCAGCTCAAGATAAAAGTATATCCTCTAGTAATGGAGTACAAGTATCTGGAGAAAGTAATTACAAATCTCCAGTTATTCCAGACGATTTTCGTTGCCCCATTTCTCTGGAATTGATGAAGGATCCTGTCATTGTTTCTACAGGCCAGACTTATGAACGTTCCTGCATTGAAAAGTGGCTGGAAGCAGGGCATGGAACATGTCCAAAGACGCAACAGACACTCTCCAGCACCACTCTTACGCCAAATTATGTCTTGCGTAGTCTCATAGCGCAGTGGTGTGAGGCAAATGGGCTTGAACCACCAAAGAGACCCAGTAGTTCTCAGTCTAAAACATCTGCTTGCTCACCTGCCGAACGCACTAAAATTGAAATTCTTCTTTGTAAACTAATGTCTGGCAACCCTGAAGACCAGCGTTGTGCTGCTGGTGAGATTCGCCTTCTGGCGAAGCGCAATGCGGATAACCGAGTAGCCATTGCCGAGGCCGGTGCAATCCCTCTTCTCGTGAGCCTCCTTTCAACGGCAGATTCACGCATACAAGAGCATGCAGTAACAGCACTTCTTAACCTTTCCATTTGTGAGGAGAATAAGGGAGCCATTGTGTCCTCTGGGGCTGTCCCAGGTATAGTTCACGTGCTCAAGAAAGGAAGCATGGAAGCTAGGGAAAATGCAGCAGCCACCCTTTTCAGCCTTTCTGTTGTGGATGGAAATAAAGTTACAATTGGTGCCTCTGGAGCCATTCCACCACTTGTCATGCTGCTTAAGTGA 1449 45.89 MAEEKRVVVQSLIEAVNEIASISDYRHTVKKEYCNLARRLKLLTPMFEEIRDSGEALPEETLKALVSLKAALKSAIELLKFGSEGSKIYLALEVENIMHKFHEITAQLEQALSGISYDNLDASDEVKEQVELVLAQFRRAKGRIDMPDAQLHDELVSLYQTVTDPSVVRRLAEKLDLTGVSDLKQESLALSEMAIARGDDPGETFEKMLMLLKKIKDFVLTEYPEMDDPAQDKSISSSNGVQVSGESNYKSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQTLSSTTLTPNYVLRSLIAQWCEANGLEPPKRPSSSQSKTSACSPAERTKIEILLCKLMSGNPEDQRCAAGEIRLLAKRNADNRVAIAEAGAIPLLVSLLSTADSRIQEHAVTALLNLSICEENKGAIVSSGAVPGIVHVLKKGSMEARENAAATLFSLSVVDGNKVTIGASGAIPPLVMLLK 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5627796 5630970 - Bma010932.1 Bma14g00501 94482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00501 482 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 390 432 IPR000225 GO:0005515
Bma14g00501 482 MobiDBLite consensus disorder prediction 231 248 - -
Bma14g00501 482 Gene3D - 7 118 IPR036537 GO:0007166
Bma14g00501 482 SUPERFAMILY ARM repeat 349 482 IPR016024 -
Bma14g00501 482 CDD RING-Ubox_PUB 258 300 IPR045210 -
Bma14g00501 482 ProSiteProfiles U-box domain profile. 253 327 IPR003613 GO:0004842|GO:0016567
Bma14g00501 482 Gene3D - 335 482 IPR011989 -
Bma14g00501 482 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 327 IPR013083 -
Bma14g00501 482 SUPERFAMILY RING/U-box 245 330 - -
Bma14g00501 482 MobiDBLite consensus disorder prediction 227 248 - -
Bma14g00501 482 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 481 - -
Bma14g00501 482 SMART arm_5 379 419 IPR000225 GO:0005515
Bma14g00501 482 SMART arm_5 420 460 IPR000225 GO:0005515
Bma14g00501 482 Pfam Armadillo/beta-catenin-like repeat 379 418 IPR000225 GO:0005515
Bma14g00501 482 Pfam Armadillo/beta-catenin-like repeat 421 459 IPR000225 GO:0005515
Bma14g00501 482 Pfam U-box domain 254 324 IPR003613 GO:0004842|GO:0016567
Bma14g00501 482 PANTHER U BOX DOMAIN-CONTAINING 6 481 - -
Bma14g00501 482 SMART Ubox_2 257 320 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma11g00122 Bma14g00501 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00574 Bma-Chr6:30839405 Bma14g00501 Bma-Chr14:5627796 3.33E-07 dispersed
Bma11g00077 Bma-Chr11:858083 Bma14g00501 Bma-Chr14:5627796 1.20E-12 dispersed
Bma11g00078 Bma-Chr11:883286 Bma14g00501 Bma-Chr14:5627796 4.87E-14 dispersed
Bma14g00501 Bma-Chr14:5627796 Bma14g01592 Bma-Chr14:32906392 5.35E-08 dispersed
Bma01g02371 Bma-Chr1:81364659 Bma14g00501 Bma-Chr14:5627796 3.08E-16 transposed
Bma07g00500 Bma-Chr7:6167692 Bma14g00501 Bma-Chr14:5627796 3.90E-18 transposed
Bma11g00122 Bma-Chr11:1154400 Bma14g00501 Bma-Chr14:5627796 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00501 - - pvy:116146246 721.465