Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00510 ATGGGTAGCCCTAAGAAGAATCAGAGTAAAGGATTATTTGCCGCCATGAGTTCCGGTCTGTCCATGTTTGGCAATGCCATGCACCGATCTGTCAACGGGTTGCTTGGTTATGAAGGGGTAGAGGTTATAAATCCCGAAGGAGGCAAAGAGGACGCAGAAGAGGAAGCTCATAAAGGAAGATGGAGACAAGAGGATCGTGATAGTTACTGGAAGATGATGCACAAGTATATAGGGTCGGATGTCACATCAATGGTGACACTTCCTGTTTTTATTTTTGAACCAATGACGATGCTTCAAAGAATTGCAGAGATGATGGAGTATTCTCACTTGTTGGATCAAGCAGATGAATGTGAAGACCCCTATATGCAACTGGTCTATGCATCATCATGGGCCATATCTATATATTATGCCTACCAAAGAACATGGAAGCCTTTTAATCCCATACTTGGTGAGACTTATGAATTTAATCATAATGGGATCACCTTTATTTCAGAGCAGATTAGTCATCATCCCCCCATGAGTGCTGGGCATGCTGAAAATGAGCATTTTACTTATGACGTGACATCAAAGTTAAAAACTAAATTTTTAGGAAACTCTGTCGATATCTACCCTATTGGAAGGACTCGTGTAACTCTCAAAAGGGTTGGTGTGACATTAGATCTGGTGCCCCCTCCCACGAAGGTCAATAACCTGATATTTGGAAGGACTTGGGTTGATTCACCAGGAGAGATGATTATGACAAATTTAACCACTGGGGATAAAGCTGTGCTCTATTTTCAACCATGTGGCTGGTTTGGAGCTGGTCGCTACGAAGTAGATGGTTACATTTATAATGCTAACGAAGAGCCAAAAATACTGATGACTGGAAAGTGGAACGAGTCGATGAGTTATCAACCATGTGATATGGAAGGGGAGCCTCTTCCTGGCACAGAATTGAAAGAGGTTTTTCACGTGGCTGAGGCTCCGGAAAATGACAAATTCGACTACACATACTTTGCACATAAAATAAACAGTTTTGATACTGCCCCAAAAAAGTTGCTAGCCTCAGATTCTCGTTTGCGTCCCGATAGATACGCACTAGAGAAGGACTACCTATCCAAAGCCGGGGCAGAAAAGAGCAGCTTGGAAGAGAGGCAGAGATCTGAGAAGAAGACTCGAGAATCGAACGGTCAACAATTTATACCTCGATGGTTTGATTTAACGGAAGAGTTGACTGCTACTCCGTGGGGTGACTTGGAAATTTACCAATACAACGGTAAGTACACCGCCCATCGAGCTGCAATGGACGAATTCACAGATGACCGTGAGATCGACGTCTCCTCGACGGAGTTCAGCCCGTGGCAGTTTGGGAATTAG 1356 43.73 MGSPKKNQSKGLFAAMSSGLSMFGNAMHRSVNGLLGYEGVEVINPEGGKEDAEEEAHKGRWRQEDRDSYWKMMHKYIGSDVTSMVTLPVFIFEPMTMLQRIAEMMEYSHLLDQADECEDPYMQLVYASSWAISIYYAYQRTWKPFNPILGETYEFNHNGITFISEQISHHPPMSAGHAENEHFTYDVTSKLKTKFLGNSVDIYPIGRTRVTLKRVGVTLDLVPPPTKVNNLIFGRTWVDSPGEMIMTNLTTGDKAVLYFQPCGWFGAGRYEVDGYIYNANEEPKILMTGKWNESMSYQPCDMEGEPLPGTELKEVFHVAEAPENDKFDYTYFAHKINSFDTAPKKLLASDSRLRPDRYALEKDYLSKAGAEKSSLEERQRSEKKTRESNGQQFIPRWFDLTEELTATPWGDLEIYQYNGKYTAHRAAMDEFTDDREIDVSSTEFSPWQFGN 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5688173 5692494 + Bma010941.1 Bma14g00510 94491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00510 451 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 1 450 IPR000648 GO:0008289
Bma14g00510 451 Gene3D - 148 325 - -
Bma14g00510 451 SUPERFAMILY Oxysterol-binding protein-like 63 428 IPR037239 -
Bma14g00510 451 ProSitePatterns Oxysterol-binding protein family signature. 165 176 IPR018494 -
Bma14g00510 451 Gene3D - 357 445 - -
Bma14g00510 451 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 3C-LIKE ISOFORM X1 1 450 - -
Bma14g00510 451 Pfam Oxysterol-binding protein 68 425 IPR000648 GO:0008289
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00510 - - - tcc:18590671 831.632
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g01601 Bma14g00510 BCT
Bma07g01544 Bma14g00510 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g00510 Bma-Chr14:5688173 Bma15g00230 Bma-Chr15:2272975 1.34E-45 dispersed
Bma14g00510 Bma-Chr14:5688173 Bma07g01544 Bma-Chr7:50955227 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g512 . . . Bda08g00569 . . Bma07g01601 Bma14g00510 . . . . Car02g01309 . . . . Bhi11g00211 Tan01g2012 . . . . . . . . . . . . . . . . . Csa05g00404 Chy09g01108 . Blo03g00415 . Bda07g00005 Bda09g00095 Bpe08g01434 Bpe11g00265 . . . . . . . . . . Cpe13g00226 Bhi12g00422 . . . . . . Cla01g00377 Cam01g0396 Cec01g0388 Cco01g0408 Clacu01g0397 Cmu01g0378 Cre09g2134 Lsi09g00408 . Chy06g02027 .
Vvi6g466 . . . . . Bpe08g01373 Bma14g00510 Bma07g01544 Cmo13g00116 . Cma01g00613 Cma13g00120 Car01g00556 Car13g00088 . . Cpe20g00827 Bhi08g00590 . . . . . Lcy11g0171 . . . . . . . Cone1ag0633 . Cone4ag1051 . Lsi02g01348 . . . . . . . . Bpe11g00757 . . . . . . . . . . . . . . . . . . Cla03g00134 Cam03g0136 Cec03g0136 Cco03g0143 Clacu03g0139 Cmu03g0758 Cre03g0452 . Csa01g02431 Chy12g00210 Cme12g00166
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004306 1 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00510 Bma_Chr14 FPKM 0.0 0.0 0.016324 0.0 0.0 0.0 0.0 0.0 0.0 0.0