Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00562 ATGAATGCGTCGGAAGGAGTACCGGAGCGAATCTGGGTTTGTTCGACATTAAAGAGCACGAAGTCGGCTGGTATTTTTTACGGCGAGAGTCCCTTCGACTACCCAACTCCTGTTCTCTTAGCGCAGCTTTCTCTGGCTGCCTTTCTCACAGCCCTCTTGCAGTACATTCTCACCCCACTCGGTGAAAGCGCTTTCGTTTCCCAAATGCTGGTGGGTATTGCACTGGGGCCGTCTTTCTTTGGAAATAATAATGATACCGTCTTAAACGCGATCTTCCCAGCTGGTAGCTTCTACGTGAGTGAAACGTTTGCCTTCTTTGGCTGCATGTTCTTCATGTTTCTGGTTGGGGTGAAAATGGATGTCAGCTTGCTGATGAAATCAGGGAAAAAGGCGATTGCCATAGGTCTCGGCGCATTCTTTGTGCCTTTAATTCTCAACGTAATCTTCGCCTTCTTCCTGCGGAGTAAGTTTAGCATGCCTACAACTTTGAGCAGATCTCTCATCACCATTGCTGTCTTTCAGTCTTCGAGCTCCTTCTATGTAATAGCATGTCTTTTAGAGGACTTGAAGCTCCTTAATTCGGAGCTTGGACGATTAGCTTTATCTTCCTCGATGATTAGTGGGATGTTGTCGTGGATGTGTATGGTGATAGGACTCACAGCCAGGCAAACCTCACTGGGGCATCGATATGCTCTTCCATGGATGGCCTTCTGTTTTGGCGGCATGCTACTTTTCATTATATTCATCCTCCGACCCATGACGCTCTGGATGGTGGCAAACACCGCCAGAGGAAAGCTAATCAAAGAGGCCTACGTTTTCTGGCTCTTCGTCATGGTCCTAGGGTGTGCTCTGTTAAGCGAGCTCATAGGGCAGCATTTCATGTTGGGGCCTATGATTTTGGGTCTTGCAGTTCCAGATGGACCTCCATTAGGGGCAGCTTTGGTGGAGAAGCTCGAATCCTTTGTCTCCTCCATCCTTCTTCCGCTATACTTCGTTTTCAGCGGGGCGAGAATCAATCTATCCGATGTTCATATGAACACCTTAGGAATTGTGCTGCTACTGGCTTTATGCAGCTTCTCGGGCAAGCTCATTGGAACTATAGTTCCTTCGCTTTACTGTGAAATGCCTCTTCCCGATTCTCTCTCACTAGGCCTAGTAATGAGCACCCAGGGTATCGCTGATATCCTTGTTTTGCAGCAAGGAATGCTCCTCCTTTTGATCGACCAGCAATCCTACAGTGTGATGGCGTTAACGACACTGTTATTGACGGCAACAATCAGCCCCATCGTAAAAGTTCTGTATAATCCGTCCAAGAGATACAGGTCCAACAAGAGGAGGAGGACGATAGAGCATGCGGCGCCCAACGGAGAGCTGCGCTTACTGGTGTGCCTCTACCATGAAGACAGCACTCCACCCATGATCAATCTGCTGGAAATCTCCAACCCAACTCCCAAGAACCCAATCTGCTTCTACGTCGTCCACCTCATGCAGCTCTCCGGCCGATCATCCCCTCTTCTCATCACCCACAAACCAGGAAAGACGAATTCCCTCCACTCCGATTTCTCGGATCGTATCATCAATGCCTTCCACCTCTTCCAGCGCAGCAACAGCGGAACAGTTATTATGAACGCCTTCACCTCCATTGCTCCTTACTCCACCATGCACGACGATGTGTGCATGCTCGCTCTGGAGAAAAGGTCTTCGATTGTGATAGTCCCTTTCCACAAGCAGAGGACATTGCATGGCACAGTGGAAACTGCTAGCCCCATCAGAGTCGTCAATCGTAACATTCTCTCAAAAGCCCCTTGCTCGGTCGGAATCTTGGTCGACCGAGGGACCTTGGCTTCCAAATCCCTGTATAGAATCGGAGTGTTCTTCATCGAAGGGCCAGACGATCGGGAAGCTTTAGCTTACGCCACTCGCATGGCTGAGCATCCAAATGTAGGCGTCTCCGTGATTCGGATTGTATATCAATGGGACAAACAGAGAAAGCGCGAAGCCGAGAGAAAAATGGATGCAACCGTGATCGACCGGTTCGAAGCAGCCAGTGAAGGCAAAAAACGGCACGTCTACGACGAAAAAATGGTGAACGATAGTGTAGAATTGATCAATACAATTAGGTGTAGGAAAACCAGCTACGATTTGATATTGGTGGGAAGACGACACGACAGCGAATCGCCATTGTTCGTGGGACTCTCAGAATGGAACGAGTTTCCAGAGCTGGGATTCATCGGCGACATGCTCGTCTCTTCGGATTCAAACTGCGAATCCTCCGTTCTGGTGGTGCAGCAGCAATCCATCGGAGGAGATCAAGAGATTCCAGACACATCCAGGTGTCATGCAGAGGAACCCTTCCCCGTGATCCCCTCATCTAGTCAAGGTCTGGCCAGGGACCGGAAGTTAAAATTTTAG 2412 49.3 MNASEGVPERIWVCSTLKSTKSAGIFYGESPFDYPTPVLLAQLSLAAFLTALLQYILTPLGESAFVSQMLVGIALGPSFFGNNNDTVLNAIFPAGSFYVSETFAFFGCMFFMFLVGVKMDVSLLMKSGKKAIAIGLGAFFVPLILNVIFAFFLRSKFSMPTTLSRSLITIAVFQSSSSFYVIACLLEDLKLLNSELGRLALSSSMISGMLSWMCMVIGLTARQTSLGHRYALPWMAFCFGGMLLFIIFILRPMTLWMVANTARGKLIKEAYVFWLFVMVLGCALLSELIGQHFMLGPMILGLAVPDGPPLGAALVEKLESFVSSILLPLYFVFSGARINLSDVHMNTLGIVLLLALCSFSGKLIGTIVPSLYCEMPLPDSLSLGLVMSTQGIADILVLQQGMLLLLIDQQSYSVMALTTLLLTATISPIVKVLYNPSKRYRSNKRRRTIEHAAPNGELRLLVCLYHEDSTPPMINLLEISNPTPKNPICFYVVHLMQLSGRSSPLLITHKPGKTNSLHSDFSDRIINAFHLFQRSNSGTVIMNAFTSIAPYSTMHDDVCMLALEKRSSIVIVPFHKQRTLHGTVETASPIRVVNRNILSKAPCSVGILVDRGTLASKSLYRIGVFFIEGPDDREALAYATRMAEHPNVGVSVIRIVYQWDKQRKREAERKMDATVIDRFEAASEGKKRHVYDEKMVNDSVELINTIRCRKTSYDLILVGRRHDSESPLFVGLSEWNEFPELGFIGDMLVSSDSNCESSVLVVQQQSIGGDQEIPDTSRCHAEEPFPVIPSSSQGLARDRKLKF 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6018461 6021024 - Bma010992.1 Bma14g00562 94543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00562 803 Pfam Sodium/hydrogen exchanger family 47 431 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Bma14g00562 803 PANTHER CATION/H+ EXCHANGER 2 9 779 - -
Bma14g00562 803 PANTHER CATION/H + ANTIPORTER 9 779 - -
Bma14g00562 803 MobiDBLite consensus disorder prediction 781 803 - -
Bma14g00562 803 Gene3D - 38 445 IPR038770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00562 - - - csv:101213983 922.154
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g01585 Bma14g00562 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00264 Bma-Chr13:4395934 Bma14g00562 Bma-Chr14:6018461 3.10E-126 dispersed
Bma13g00502 Bma-Chr13:9524517 Bma14g00562 Bma-Chr14:6018461 5.61E-127 dispersed
Bma02g00654 Bma-Chr2:18234338 Bma14g00562 Bma-Chr14:6018461 2.50E-163 transposed
Bma14g01993 Bma-Chr14:43240494 Bma14g00562 Bma-Chr14:6018461 1.09E-150 transposed
Bma14g00562 Bma-Chr14:6018461 Bma03g00217 Bma-Chr3:1621020 2.32E-179 wgd
Bma14g00562 Bma-Chr14:6018461 Bma07g01585 Bma-Chr7:51141633 0 wgd
Bma14g00562 Bma-Chr14:6018461 Bma08g01032 Bma-Chr8:49468348 6.66E-137 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g78 . . . . . . . Bma14g00562 . Cmo16g00617 . . . . . Cpe14g00481 . . . . . . . . Cla07g00709 Cam07g0766 Cec07g0834 Cco07g0810 Clacu07g0749 Cmu07g0760 Cre07g1114 . . . . . . . . . . . . . Bpe11g00707 . . . . . . Cma16g00567 . . . . . . . . . . . . . . . . . . . Csa04g00629 Chy07g01184 .
Vvi6g712 . . . . . Bpe08g01413 Bma14g00562 Bma07g01585 Cmo13g00018 . Cma01g00708 . Car01g00643 Car13g00009 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g00523 . . Bpe11g00707 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007406 3 1 2 2 2 1 2 1 1 0 1 1 2 1 1 2 1 0 2 1 1 1 0 1 1 1 1 1 0 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00562 Bma_Chr14 FPKM 1.702899 1.860497 3.430018 3.57449 3.470757 4.983372 3.228698 1.863225 3.035682 2.919291