Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00564 ATGTTAGTTCCGAAGCTGACGGCGTTGCTGAGCAGCTCCATTACCTTCAATCAGTTCAAACAGATTCAAGCTTTCGTCGTCATTAACGGCCTTAATCGGGTGGAGCCTCTTCTAATTCAGTGTCTTCTACGCTGCTTTCTCAGCTATTGTAGAACCACATCGGAATACGTCCAACTCGTTCTCCATCATTCGAAACACCCAGATGCATTTTCGTGGGGCTGCACTGTCCGGTTCTTCTCCCAACAGGGCCGATTCGAAGAAGCTTTTTCGCATTACGTTCAGATGCAAAGACTCGGCCTTCGACCGAGCACGTTTGCTATATCGTCGACTTTAAGAGCTTGTGCCAGGATTTCGCACAAATTAGGTGGAAATTATGTTCATGGTCAGGTTTATAGATTTGGATTTTGTAGATGTGTTTATGTGCAGACAGCTCTTGTGGATTTTTATTCTAAACTGGGCGAACTTGAGTTTGCACAGAGAGTTTTCGATGATATGGTTGAGAAAAATGTTGTGTCTTGGAATTCTATCTTGTCTGGTTATTTGAAATCTGGATATTTAAAAGTTGCACAGAAGCTGTTTGATGAAATGCCGAAAAAAGATGTTGTATCATGGAATTGTATGTTGTCTTGGTATGCTGGCAAAGGAAATATGGACGAAGCGTCTTCCTTATTTGAAAAAATAGTCGAGAAGAACTCTGTTTCGTGGAATATAATGATCAGTGGTTATGTCGAGAATGGAGACATAAAATTAGCTCGGAAGCTGTTCGATGAAATGCCGCAACGAAACAATATTTCGAGGGTTATAATGATTTCAGGATATTCAGGGGTTGGTGATGTAGGGTCTGCTCGCGAACTCTTTGATCAAACGTTTGGGAAAGATTTGAGTGTCTACAATGCCATGATATCTTGTTATGCACAAAATAGTTTACCAGAGGAGTGCTTAAATATGTTTAATCAAGTTCTCCAGCCGGAATTGAATATTAATCCAGATCAGATGACTTTGTCCAGCGCAGTATCTGCCTGTTCGCAGTTGGGTGACTACAAATTCGGGTTTTGGATCGAGTCTTATGCGAAGAAACTTGGAATTGAATTAGACGATCATTTGACCACAGCTTTCATTGACTTGTATGCAAAATGTGGACGCGTAGATAAGGCAAATGACCTGTTTCAGAGTTTGGGGAAGAAGGATTTGGTTGCCTATTCTGCGATGATCTCGGGATGTGGCATAAACGGCAAGATCTCCGAAGCAATGATGCTATTTAAAGAGATGGTGAATGAAAAAATAACCCCAAATTTAGTCACTTTCACTGTACTACTAACTGCGTATAATCATGCGGGTTTGGTCGAAGAAGGCTACAAATGCTTCAACTCTATGAAAGACTATGGACTTGTTGCTTTAACCGATCACTATGCAATCATCGTCGACCTTCTGGGTCGAGCGGGACGATTAGGGGAAGCATACAATCTAATTAAGCGCATGCCAATGGAGCCTCGTGTTGAGGTTTGGGGGGCTTTGCTTCTAGCTTGCAAATTACACAACAATGTTGAGCTCGGGGAGATTGCTGCTTACCATTGCTTCGAATTAGAGCCGAATACGGTTGAGTATCGATCCCTTCTTTCGAACATTTATGCTTCTGTTGAGAGATGGGATGATGCTGAGAGATTGAGGCAGGTTATGGAGGATAAGCCTGTCTTTAAAATACCCGGGTGTAGTTGGACAGAATAG 1725 42.2 MLVPKLTALLSSSITFNQFKQIQAFVVINGLNRVEPLLIQCLLRCFLSYCRTTSEYVQLVLHHSKHPDAFSWGCTVRFFSQQGRFEEAFSHYVQMQRLGLRPSTFAISSTLRACARISHKLGGNYVHGQVYRFGFCRCVYVQTALVDFYSKLGELEFAQRVFDDMVEKNVVSWNSILSGYLKSGYLKVAQKLFDEMPKKDVVSWNCMLSWYAGKGNMDEASSLFEKIVEKNSVSWNIMISGYVENGDIKLARKLFDEMPQRNNISRVIMISGYSGVGDVGSARELFDQTFGKDLSVYNAMISCYAQNSLPEECLNMFNQVLQPELNINPDQMTLSSAVSACSQLGDYKFGFWIESYAKKLGIELDDHLTTAFIDLYAKCGRVDKANDLFQSLGKKDLVAYSAMISGCGINGKISEAMMLFKEMVNEKITPNLVTFTVLLTAYNHAGLVEEGYKCFNSMKDYGLVALTDHYAIIVDLLGRAGRLGEAYNLIKRMPMEPRVEVWGALLLACKLHNNVELGEIAAYHCFELEPNTVEYRSLLSNIYASVERWDDAERLRQVMEDKPVFKIPGCSWTE 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6055263 6056987 + Bma010994.1 Bma14g00564 94545

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00564 574 Pfam E motif 512 574 IPR046848 -
Bma14g00564 574 PANTHER OS08G0162200 PROTEIN 229 574 - -
Bma14g00564 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Bma14g00564 574 Pfam PPR repeat 296 319 IPR002885 -
Bma14g00564 574 Pfam PPR repeat 268 288 IPR002885 -
Bma14g00564 574 Pfam PPR repeat 470 494 IPR002885 -
Bma14g00564 574 Pfam PPR repeat 71 100 IPR002885 -
Bma14g00564 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Bma14g00564 574 Gene3D Tetratricopeptide repeat domain 289 395 IPR011990 GO:0005515
Bma14g00564 574 Gene3D Tetratricopeptide repeat domain 396 568 IPR011990 GO:0005515
Bma14g00564 574 PANTHER OS08G0162200 PROTEIN 166 228 - -
Bma14g00564 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Bma14g00564 574 Gene3D Tetratricopeptide repeat domain 126 199 IPR011990 GO:0005515
Bma14g00564 574 Gene3D Tetratricopeptide repeat domain 38 122 IPR011990 GO:0005515
Bma14g00564 574 Gene3D Tetratricopeptide repeat domain 200 275 IPR011990 GO:0005515
Bma14g00564 574 PANTHER OS07G0578800 PROTEIN-RELATED 53 166 IPR045215 GO:0003723|GO:0009451
Bma14g00564 574 PANTHER OS07G0578800 PROTEIN-RELATED 166 228 IPR045215 GO:0003723|GO:0009451
Bma14g00564 574 SUPERFAMILY TPR-like 125 266 IPR011990 GO:0005515
Bma14g00564 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Bma14g00564 574 PANTHER OS08G0162200 PROTEIN 53 166 - -
Bma14g00564 574 PANTHER OS07G0578800 PROTEIN-RELATED 229 574 IPR045215 GO:0003723|GO:0009451
Bma14g00564 574 Pfam PPR repeat family 230 262 IPR002885 -
Bma14g00564 574 Pfam PPR repeat family 395 442 IPR002885 -
Bma14g00564 574 Pfam PPR repeat family 168 200 IPR002885 -
Bma14g00564 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Bma14g00564 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Bma14g00564 574 TIGRFAM PPR: pentatricopeptide repeat domain 171 201 IPR002885 -
Bma14g00564 574 TIGRFAM PPR: pentatricopeptide repeat domain 398 431 IPR002885 -
Bma14g00564 574 TIGRFAM PPR: pentatricopeptide repeat domain 202 231 IPR002885 -
Bma14g00564 574 TIGRFAM PPR: pentatricopeptide repeat domain 296 319 IPR002885 -
Bma14g00564 574 TIGRFAM PPR: pentatricopeptide repeat domain 233 264 IPR002885 -
Bma14g00564 574 TIGRFAM PPR: pentatricopeptide repeat domain 433 464 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00564 - - - jre:108981853 771.926
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g00564 Bma-Chr14:6055263 Bma11g00471 Bma-Chr11:5726886 1.10E-108 dispersed
Bma14g00564 Bma-Chr14:6055263 Bma12g00662 Bma-Chr12:27848397 2.58E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g473 . . . . . . . Bma14g00564 . . . Cma15g01168 . Car15g01057 . . . . . . . . . . . . . . . . . . . . . . Csa05g00369 Chy09g01141 . Blo03g00389 . Bda07g00518 . . Bpe11g00705 . . . . Cmo15g01230 . . . . . . Bhi12g00368 . . Lac11g2208 Hepe06g1629 . . Cla01g00344 . . . . . . . . . Cme09g01672
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010341 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00564 Bma_Chr14 FPKM 21.011274 26.418938 22.253866 22.470358 32.886772 30.837847 30.293571 32.228683 36.336246 34.462425