Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00574 ATGAGCGTAATCGCCCAGAACGACGGCGAAAGAGAAACAAATCTTCCTCTGGTTCTCTTGCATCGTCTTCCCACCTTCAATCTACGGTTGGGAGACCGGATCCTCAGCAACTTCCGTCTCCTTGATCCCCATAGCTCGCCCGAGCCTACTCACTCTTTCATCGCTCGTCATTCCCCCTCCATTCGAGCTCTTATCTGCGTGGGTCCGACGCCTCTCCCTTCTGATACTCTCCACCTCCTCCCGGCGCTGGAGCTGGTTGTGTGTTCCAGCGCCGGTATTGATCACGTCGATGTCGCGGAGTGCCGTCGGAGGGGCATTTCTGTAACAAATGCCGGAAGTGCCTTTGCAGAGGACACGGCCGATTTTGCAGTGGCGCTGTTTATCGATGTATTGCGGCGGCTTTCTGAGGGTGATCGATATGTTCGGTCCGGGCTATGGCCAGTGAACGGCGATTTCCCTCTTGGATCAACAGTAAACCGAAAGCGAGTCGGGATTGTCGGGCTCGGAAGGATCGGCTCTGAAATTGCAGTAAGACTCCAAGCTTTTGGCTGTAACATAGCTTACACTTCAAGAACAAAGAAGGAATCCATTCCCTACAAGTACCACGAAAATGTCTCCGACCTGGCAGCCAATACCGATGTGCTAATAATTTGTTGTGCTCTAACCGAACAAACATTCCACATTGTCGACGAAGTTGTTATTAAAGCGTTGGGAAAGGAAGGGGTGATAATAAACGTCGGTCGGGGGGCTCTGGTCGACGAGAAGGCACTCGTTCGAGCATTGAAGGACAGAGAGATTAAGGGTGCAGGGTTTGATGTGTTCGAGAACGAGCCTAATGTGCCTCCGCAACTACTAGAGATGGACAATGTGGTGTTGTCTCCTCATCGAGCTGTGCTCACTCCGCAATCGCTCGAGGCAGTCGTCGATGTTGTTCTTGCCAATTTGGAGGCTTTCTTCTCAAATCGGCCTCTGCTTTCTGCTGTCCAACTTGAATGA 996 51.81 MSVIAQNDGERETNLPLVLLHRLPTFNLRLGDRILSNFRLLDPHSSPEPTHSFIARHSPSIRALICVGPTPLPSDTLHLLPALELVVCSSAGIDHVDVAECRRRGISVTNAGSAFAEDTADFAVALFIDVLRRLSEGDRYVRSGLWPVNGDFPLGSTVNRKRVGIVGLGRIGSEIAVRLQAFGCNIAYTSRTKKESIPYKYHENVSDLAANTDVLIICCALTEQTFHIVDEVVIKALGKEGVIINVGRGALVDEKALVRALKDREIKGAGFDVFENEPNVPPQLLEMDNVVLSPHRAVLTPQSLEAVVDVVLANLEAFFSNRPLLSAVQLE 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6175478 6176667 + Bma011005.1 Bma14g00574 94555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00574 331 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 54 328 IPR006139 GO:0016616|GO:0051287
Bma14g00574 331 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 116 297 IPR036291 -
Bma14g00574 331 PANTHER GLYOXYLATE/HYDROXYPYRUVATE REDUCTASE HPR3 6 331 - -
Bma14g00574 331 PANTHER 2-HYDROXYACID DEHYDROGENASE-RELATED 6 331 - -
Bma14g00574 331 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 41 152 - -
Bma14g00574 331 Gene3D - 116 300 - -
Bma14g00574 331 CDD HPPR 16 320 - -
Bma14g00574 331 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 124 297 IPR006140 GO:0051287
Bma14g00574 331 Gene3D - 36 323 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00574 K15919 HPR2_3; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] - twl:119987401 412.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01186 Bma-Chr6:48941424 Bma14g00574 Bma-Chr14:6175478 1.81E-12 dispersed
Bma06g01230 Bma-Chr6:49396985 Bma14g00574 Bma-Chr14:6175478 8.27E-118 dispersed
Bma06g01231 Bma-Chr6:49403985 Bma14g00574 Bma-Chr14:6175478 6.42E-116 dispersed
Bma14g00574 Bma-Chr14:6175478 Bma15g00367 Bma-Chr15:3852672 6.34E-86 dispersed
Bma14g00574 Bma-Chr14:6175478 Bma10g00698 Bma-Chr10:10500181 9.65E-22 transposed
Bma14g00574 Bma-Chr14:6175478 Bma10g00658 Bma-Chr10:9460029 1.16E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g431 . . . . . . . Bma14g00574 Cmo06g01148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe11g00695 . . . . . Cma06g01120 . . . Cpe08g00498 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000708 2 4 2 3 2 4 2 4 3 4 2 5 3 4 4 3 4 3 3 3 5 3 3 4 3 4 5 3 1 2 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00574 Bma_Chr14 FPKM 6.949419 8.239123 8.892185 8.30469 9.364692 9.855006 10.828769 11.133397 14.446918 11.894675