Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00575 ATGGAAGATTCCGCTGCATCCCGGTTGAATTCGGCTCTTCGAAATTCCTCTTCGTCTTCTTCCTCTTCATCTTCTTCTTCCCTGCTTAATTTGCCTGTAACAATGTCCCGGAATTCTTCGTCTTTCGAAACCCTAACCCCTTCTCGCCATATTGATCGGATGATAAATCTTAATCACCGTAAATCCCCTTCGAGAGCTATATATTCTGATAGGTTTATTCCGAGTAGATCAGGTTCTAATTTCGCGCTGTTCGACATCTCTCCTTCGGCGAATTCTCCAGCGGATACCCGCGAAGATGGCTCCAGTGCATATGCGACGCTTATTCGAACAGCCCTGTTTGGTCCCAATTCCGGAGTGGTTTCTCCGGCGACGCCAGAAAAGAGTAATATTTCGATGAATTTGCCCAACCAAAATATTTTTCGGTACAAAACGGAGACCCATCGTTCTATGCAATCCCTCTCGCCATTTGGTTTTGACGACGTAGTTCCGGGAGTTAATCATACTCCAGCAAAGGCACCTCGAAAGGTTACGCGCTCGCCTTATAAGGTTCTCGACGCTCCAGCATTGCAAGATGATTTTTATTTGAATCTTGTGGATTGGTCTGCCCATAATATTCTAGCTGTTGGCTTGGGTAACTGTGTTTATTTGTGGAATGCCTGTAGTAGCAAGGTAACAAAATTGTGCGACTTGGGAAATGATGATAATGTCTGTTCAGTTGGTTGGGCTCATCGAGGAACTCATCTAGCTGTTGGGACTAGCACTGGCAAAGTTCAGATTTGGGATGCATCTCGCTGCAAAAGAGTAAGAACAATGGAAGGTCATCGTTTACGAGTTGGGGCTTTAGCTTGGAGTTCATCTTTTTTGACTTCTGGTAGCAGGGACAAAAGTATTCTCCAACGTGATATTCGTGCTCAGGAAGACTTTGTTAGTAAACTATCTGGGCACAAGTCAGAGGTTTGTGGATTGAAATGGTCTTATGATAACCGCGAGTTAGCATCGGGCGGTAATGACAACAGACTTTTTGTTTGGAATCAACATTCCACCCAACCTTTGCTTAAATATTGTGAGCATACGGCGGCAGTAAAAGCTATTGCATGGTCTCCCCATCTTCATGGGCTTCTTGCATCTGGGGGAGGGACGGCAGATAGATGTATACGTTTCTGGAACACGACAACAAACACACAATTGAACTGCATCGACACAGGAAGTCAGGTTTGCAATCTTGTGTGGTCCAAGAATGTGAACGAACTGGTTAGCACCCATGGATATTCTCAAAATCAAATAATAGTTTGGAGATACCCAGCCATGTCAAAGTTGGCAACACTAACGGGCCATACATACCGAGTGCTTTATCTTGCCATCTCTCCTGATGGACAGACAATTGTAACTGGAGCTGGAGATGAGACACTTAGATTTTGGAACGTCTTCCCCTCCCTTAAATCTCAGGTAAAGATCTTAATCCTTCCACTTGGTAATGTTCTGAGATTTGAAGATCTTAGTTACTCTTCTTAA 1512 44.25 MEDSAASRLNSALRNSSSSSSSSSSSSLLNLPVTMSRNSSSFETLTPSRHIDRMINLNHRKSPSRAIYSDRFIPSRSGSNFALFDISPSANSPADTREDGSSAYATLIRTALFGPNSGVVSPATPEKSNISMNLPNQNIFRYKTETHRSMQSLSPFGFDDVVPGVNHTPAKAPRKVTRSPYKVLDAPALQDDFYLNLVDWSAHNILAVGLGNCVYLWNACSSKVTKLCDLGNDDNVCSVGWAHRGTHLAVGTSTGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSFLTSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPLLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTQLNCIDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPAMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSLKSQVKILILPLGNVLRFEDLSYSS 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6183209 6186416 + Bma011007.1 Bma14g00575 94556

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00575 503 MobiDBLite consensus disorder prediction 1 30 - -
Bma14g00575 503 SMART WD40_4 264 301 IPR001680 GO:0005515
Bma14g00575 503 SMART WD40_4 305 344 IPR001680 GO:0005515
Bma14g00575 503 SMART WD40_4 177 218 IPR001680 GO:0005515
Bma14g00575 503 SMART WD40_4 435 474 IPR001680 GO:0005515
Bma14g00575 503 SMART WD40_4 347 389 IPR001680 GO:0005515
Bma14g00575 503 SMART WD40_4 221 261 IPR001680 GO:0005515
Bma14g00575 503 SMART WD40_4 392 432 IPR001680 GO:0005515
Bma14g00575 503 Pfam WD domain, G-beta repeat 349 389 IPR001680 GO:0005515
Bma14g00575 503 Pfam WD domain, G-beta repeat 438 474 IPR001680 GO:0005515
Bma14g00575 503 Pfam WD domain, G-beta repeat 309 344 IPR001680 GO:0005515
Bma14g00575 503 Gene3D - 170 478 IPR015943 GO:0005515
Bma14g00575 503 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 24 484 IPR033010 GO:0010997|GO:0097027|GO:1904668
Bma14g00575 503 ProSiteProfiles Trp-Asp (WD) repeats profile. 442 475 IPR001680 GO:0005515
Bma14g00575 503 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 312 344 - -
Bma14g00575 503 Pfam Anaphase-promoting complex subunit 4 WD40 domain 224 285 IPR024977 -
Bma14g00575 503 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 353 IPR001680 GO:0005515
Bma14g00575 503 PANTHER PROTEIN FIZZY-RELATED 1 24 484 - -
Bma14g00575 503 SUPERFAMILY WD40 repeat-like 190 475 IPR036322 GO:0005515
Bma14g00575 503 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 270 IPR001680 GO:0005515
Bma14g00575 503 ProSitePatterns Trp-Asp (WD) repeats signature. 461 475 IPR019775 -
Bma14g00575 503 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 442 475 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00575 K03364 CDH1, FZR1; cell division cycle 20-like protein 1, cofactor of APC complex - mnt:21405920 832.017
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00134 Bma-Chr3:1016676 Bma14g00575 Bma-Chr14:6183209 0 dispersed
Bma08g00154 Bma-Chr8:1924058 Bma14g00575 Bma-Chr14:6183209 1.03E-112 dispersed
Bma14g00575 Bma-Chr14:6183209 Bma04g00486 Bma-Chr4:4250811 2.26E-08 dispersed
Bma14g00575 Bma-Chr14:6183209 Bma13g00001 Bma-Chr13:69414 6.44E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g425 . . . . . . . Bma14g00575 . . Cma02g01496 Cma15g01185 Car02g01258 Car15g01073 . . Cpe05g00294 . . . . . . . . . . . . . . . . Cone6ag0735 Cone9ag0739 . Csa05g00338 Chy09g01171 . Blo03g00379 . Bda07g00507 . . Bpe11g00694 . . . Cmo02g01537 Cmo15g01249 . . . . . Cpe13g00188 Bhi12g00333 . . Lac11g2159 Hepe06g1599 . Lcy12g1717 Cla01g00318 Cam01g0328 Cec01g0320 Cco01g0337 Clacu01g0330 Cmu01g0314 Cre09g2197 Lsi09g00323 . . Cme09g01704
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006983 1 1 1 1 1 1 4 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00575 Bma_Chr14 FPKM 0.72817 0.836071 0.833554 0.486799 2.05093 1.779874 2.340496 3.89567 3.974162 3.987257