Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00579 ATGAAAGAAGAACCGGTCCATTCGAACCCAATATCGGACCCCGATGAGAAGTCAAAACTGCCGCCGGAACCGCCCACTGGGAGGCTCCCCGTTGTGGTACAGCTGCCTTTACCGATGCCTGTGAATACAGCTCGGAGATCTACGAAGGACCGGCATACCAAGGTGGAGGGCCGGGGTCGGAGGATCCGAATACCCGCCGCCTGCGCAGCCCGAATCTTTCAGCTCACCCGCGAATTGGGCCACAAATCGGACGGCGAGACTGTCCGGTGGCTTCTCGAACACGCCGAACAAGCGATAATTGAAGCAACGGGAACCGGAACTGTTCCAGCCATCGCCGTCTCTGTCAATGGGACCCTCAAAATCCCGACCACCGCTAACTTTAACTGCCTGAGCAATAACGAGAATAAAAAGAGAACGCGGCCTTCGAACTCCCAGTTCATCGACATAAACGAAGGTGTTTCTCACACAACCGGGTTCGCTCCGCTCCAACCGATCACCCCAGCGTCGGCGAAACCACCAAGTCTGTTGCCGGCTGTAACGTCAATCCAAAGCCCTCAGATATGGACTATATCTCCGGCTGTAACGCAGGTTTTCAACATGTTTGCAAGACCTATTTCCCCTTTCGTCTCGAATCAGCCAGTGGGGGTAACTCTTCCATCCGCGATCAAGCTCCGAACTCCAGCGCTCTCCTTCTGCAACAGCTCGTCGACCTCCGCTGTTAGTACGAGCACTTCCGGCCCTAAAACGGCGAAGAAATCAGGGACCATGGCGGCGCCGAGCGTGAGCTGTAGGGGCAGTGGAAATGATGAATCTAAAGTTCAGATGCTTAGAGATTTTTCGTCGGAGATTTTTCATAAACAAGAGATACAGTTCATGGGGAGCATGGGGAATAAACAGAAGGCGCAATGTTCTTTGAAACCATGA 924 53.57 MKEEPVHSNPISDPDEKSKLPPEPPTGRLPVVVQLPLPMPVNTARRSTKDRHTKVEGRGRRIRIPAACAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVSVNGTLKIPTTANFNCLSNNENKKRTRPSNSQFIDINEGVSHTTGFAPLQPITPASAKPPSLLPAVTSIQSPQIWTISPAVTQVFNMFARPISPFVSNQPVGVTLPSAIKLRTPALSFCNSSSTSAVSTSTSGPKTAKKSGTMAAPSVSCRGSGNDESKVQMLRDFSSEIFHKQEIQFMGSMGNKQKAQCSLKP 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6236461 6237384 - Bma011014.1 Bma14g00579 94560

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00579 307 ProSiteProfiles TCP domain profile. 48 102 IPR017887 -
Bma14g00579 307 Pfam TCP family transcription factor 47 120 IPR017887 -
Bma14g00579 307 MobiDBLite consensus disorder prediction 1 57 - -
Bma14g00579 307 PANTHER TRANSCRIPTION FACTOR TCP9 180 295 - -
Bma14g00579 307 MobiDBLite consensus disorder prediction 1 22 - -
Bma14g00579 307 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 11 172 IPR005333 GO:0003700
Bma14g00579 307 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 180 295 IPR005333 GO:0003700
Bma14g00579 307 MobiDBLite consensus disorder prediction 236 269 - -
Bma14g00579 307 PANTHER TRANSCRIPTION FACTOR TCP9 11 172 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00579 - - - jre:108990694 287.73
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g01629 Bma14g00579 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g01183 Bma-Chr10:41830747 Bma14g00579 Bma-Chr14:6236461 6.35E-37 dispersed
Bma14g00579 Bma-Chr14:6236461 Bma15g00272 Bma-Chr15:2657284 2.28E-37 dispersed
Bma14g00579 Bma-Chr14:6236461 Bma07g01629 Bma-Chr7:51889012 6.97E-153 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g416 . . . . . . Bma07g01629 Bma14g00579 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0740 Cone9ag0744 . . . . . Blo19g00306 Bda07g00504 Bda09g00062 Bpe08g01471 Bpe11g00690 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004457 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58324 PF03634 TCP 4.20E-28 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00579 Bma_Chr14 FPKM 44.852798 49.047592 77.145256 78.70401 75.311783 77.087463 76.966927 108.435432 109.148064 111.371193