Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00580 ATGAAAAACGAGGATCAAGGCAGATCCCTGTTTGGGATTTCTCTCTCTGATCGACCTAAATGGCAACAGTTTCTAATTTGTTCTTCTGGGTTCTTCTTTGGGTACCTCGTCAATGGCGTTTGCGAGGAATATGTGTATAATCGGCTACAATTCAGCTATGGATGGTATTTCACCTTTGTGCAAGGAATTGTTTATCTAACACTGATTTACTGCCAAGGTTTCACCACAAAGCAAATGGTGAATCCGTGGAAAACATACGTAAAACTCTCGGCTGTTCTAATGGGTTCCCACGGATTAACAAAAGGGTCTCTAGCTTTTCTCAATTATCCGGCTCAGATCATGTTTAAATCCACCAAGGTATTGCCTGTTATGGTGATGGGGGCATTTATTCCTGGATTGAGAAGGAAATATCCTCTTCATGAATACATCTCTGCAATATTTCTAGTCATTGGCTTGATCCTCTTCACCTTAGCAGATGCAAGAAGCTCTCCAAATTTCAATATTTTCGGTGTTATAATGATTAGTGGTGCACTAATCATGGATTCCTTTCTTGGTAATTTACAAGAAGCCATTTTCACGATGAATCCCGAGACAACTCAGACGGAGATGCTGTTTTGCTCAACAATGGTGGGGTTGCCTCTCTTAGTTGTCCCAATGGTTTTAACAGGAGAGCTGTTCAGAGCTTGGAACTCTTGCTCAGAACATCCTTATGTCTACGGGGTGTTAGTGTTTGAATCCATGGCAACGTATGTTGGCCAAGTCTCCGTTTTATCCCTCATCGCCCTTTTCGGAGCTGCTACTACTGCCATGATAACAACGGCGAGGAAGGCGGTAACTTTGTTGCTTTCATACATGATATTTACGAAGCCATTAACGGAGCAACATGGGACAGGGTTGTTGCTGATAGCCATGGGAATTATGATAAAGATGCTGCCGCAGGAAAACAAACAGCTCCGGCCAGTTGCCACAGTCGAGCGTGGAAAACACAGAAAGGAAGTAGATATGCACGAAGTGGAGAGTGAAGATGCAGAAGAAGAGGAAAAGAGGCCTCTAGTTTAA 1059 43.15 MKNEDQGRSLFGISLSDRPKWQQFLICSSGFFFGYLVNGVCEEYVYNRLQFSYGWYFTFVQGIVYLTLIYCQGFTTKQMVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMVMGAFIPGLRRKYPLHEYISAIFLVIGLILFTLADARSSPNFNIFGVIMISGALIMDSFLGNLQEAIFTMNPETTQTEMLFCSTMVGLPLLVVPMVLTGELFRAWNSCSEHPYVYGVLVFESMATYVGQVSVLSLIALFGAATTAMITTARKAVTLLLSYMIFTKPLTEQHGTGLLLIAMGIMIKMLPQENKQLRPVATVERGKHRKEVDMHEVESEDAEEEEKRPLV 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6255682 6258039 - Bma011015.1 Bma14g00580 94561

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00580 352 PANTHER SOLUTE CARRIER FAMILY 35 MEMBER B 1 324 IPR013657 GO:0055085
Bma14g00580 352 MobiDBLite consensus disorder prediction 323 352 - -
Bma14g00580 352 PANTHER UDP-GALACTOSE/UDP-GLUCOSE TRANSPORTER 2-LIKE 1 324 - -
Bma14g00580 352 Pfam UAA transporter family 23 311 IPR013657 GO:0055085
Bma14g00580 352 SUPERFAMILY Multidrug resistance efflux transporter EmrE 230 313 - -
Bma14g00580 352 Coils Coil 326 346 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00580 K15277 SLC35B3, PAPST2; solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B3 - pvy:116142876 587.415
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01030 Bma-Chr2:51751989 Bma14g00580 Bma-Chr14:6255682 0 dispersed
Bma11g00135 Bma-Chr11:1205626 Bma14g00580 Bma-Chr14:6255682 8.15E-10 dispersed
Bma14g00580 Bma-Chr14:6255682 Bma15g00166 Bma-Chr15:1756860 1.01E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g405 . . . . . . . Bma14g00580 Cmo06g01139 . . Cma15g01195 . Car15g01083 . . . . . . . . . . . . . . . . . Cone8ag0332 Cone12ag0329 . . . Csa05g00327 Chy09g01182 . . . Bda07g00499 . . Bpe11g00688 . . . . Cmo15g01259 Cma06g01112 . Car06g00949 . Cpe08g00505 Cpe13g00179 Bhi12g00199 . . . . . Lcy12g1706 . . . . . . . Lsi09g00313 . . Cme09g01715
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001533 3 4 2 2 2 2 3 2 1 2 1 2 3 2 2 3 2 5 3 2 2 2 2 2 2 2 2 6 2 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00580 Bma_Chr14 FPKM 430.796753 454.110535 547.833313 521.233704 131.942581 150.901566 122.177162 730.284668 770.289307 707.59021