Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00584 ATGGCCACCCAAGATTTTGAGCGAGGAAATAAGAATGGGGGGAATAATTCGTCGTCGTACTACGTAGAGACTACGGAGAAGCGGTGGATTCCGTGGTTGATTCCTATGTATGTGGTGGCTAATATTGTTGTGTTCATCATAGTGATGTATATCAACGACTGCCCCAAAAACAATTTAGGGTTTCAAGGGAATTGCGTGGCGAAATCTTTAGGCAGGTTCTCGTTCCAGCCTCTTAAGGAGAATCCTCTTTTCGGCCCTTCATCTGCTACATTGGAAAAAATGGGAGGGTTAGAGTGGTCCAAGGTAGTTAATGAGAAGCAAGGATGGAGACTTCTCTCATGCATCTGGTTGCATGCTGGTTTGATTCATTTACTTGTAAACATGGTGAGTCTCATCCTCATTGGCATCCGCCTTGAACAACAATTTGGTTTCGTGTGTATCGGGCTGATATATCTGTTGGCGGGATTCGGCGGTAGCATATTAGCGGCTTTGTTTAGTCAAGGTTCTATTTCAGTTGGTGCATCTGGTGCTCTGTTTGGACTTCTTGGAGCTATGCTTTCTGAGCTTTTGACAAACTGGAGTACTTATACCAACAAGGCTGCAACTCTTATCACCCTTATAGTTGTCATAGCCATTAACTTAGCTGTTGGAATTCTCCCACACGTGGACAATTTCGCACACATTGGTGGCTTTCTGACTGGTCTCCTTCTCGGCTTTATCGTACTCGTCCGCCCACAATTTGGTTGGACCGAGCATCGTCATCTCCCTGACGGCGCTCGCTCTGTATCCAAGTATAAGCCTTATCAGTATGTTTTCTGGCTGGTCGCCCTTCTTCTTTTGGTTGCCGGATTTACAGTGGGGTTGGTGATGCTGTTCAGAGGTGAGAATGGAAATGAGCATTGCAGCTGGTGTCATTACTTAAGCTGTGTCCCTACCTCCTCATGGGATTGTGACACTTAA 960 45.83 MATQDFERGNKNGGNNSSSYYVETTEKRWIPWLIPMYVVANIVVFIIVMYINDCPKNNLGFQGNCVAKSLGRFSFQPLKENPLFGPSSATLEKMGGLEWSKVVNEKQGWRLLSCIWLHAGLIHLLVNMVSLILIGIRLEQQFGFVCIGLIYLLAGFGGSILAALFSQGSISVGASGALFGLLGAMLSELLTNWSTYTNKAATLITLIVVIAINLAVGILPHVDNFAHIGGFLTGLLLGFIVLVRPQFGWTEHRHLPDGARSVSKYKPYQYVFWLVALLLLVAGFTVGLVMLFRGENGNEHCSWCHYLSCVPTSSWDCDT 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6342254 6345417 - Bma011020.1 Bma14g00584 94565

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00584 319 PANTHER RHOMBOID-LIKE PROTEIN 1 22 318 - -
Bma14g00584 319 Pfam Rhomboid family 104 244 IPR022764 GO:0004252|GO:0016021
Bma14g00584 319 PANTHER RHOMBOID-RELATED 22 318 IPR002610 GO:0004252|GO:0006508|GO:0016021
Bma14g00584 319 SUPERFAMILY Rhomboid-like 27 246 IPR035952 -
Bma14g00584 319 Gene3D - 26 244 IPR035952 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00584 - - - zju:107429973 489.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00098 Bma-Chr12:1648778 Bma14g00584 Bma-Chr14:6342254 1.83E-159 wgd
Bma14g00584 Bma-Chr14:6342254 Bma07g01643 Bma-Chr7:52023254 4.03E-179 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g376 . . . . . . . Bma14g00584 . Cmo16g01061 . . . . . . Cpe05g00311 . . . . . . . . . . . . . . . . . . . . . . . . . Bda09g00049 . . . . . . . . . . . . . Bhi12g00209 . . Lac11g2129 Hepe06g1577 . Lcy12g1689 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000228 6 5 4 5 7 5 5 5 5 5 4 5 7 5 5 6 5 6 6 5 5 5 5 5 5 4 5 12 7 4 163
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00584 Bma_Chr14 FPKM 11.271063 10.054628 8.195573 8.386625 10.496965 14.358891 8.641043 6.892028 5.35106 7.134116