Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00595 ATGTTTCGGTTCTTCAAAACTTTGTCTGGGACAGTGCACGAAGAAGAAGAAGAAGAAGAAGAAGAGCTTCAGAGTGAATATGGAGGTGAAAGCCTGTCACTGACAGTATGGAGGAAGTCACTAATAGTGAGTTGCAATGGATTTACAGTAATTGATTCAAATGGGAATCTGGTTTATCGAGTTGATAGCTATGGCAGACATCCCCAAGAAGTCATTCTAATGGACGGCTCTGGACAAACTCTCCTCACAATGCAACGATCCAAGAAGCTTGGAGTGGATCGATGGTCAGTTTATGAAGAGGATCTAAACGAAGAAGGGACAAAAACTAGTACGAGAAGATCAAAAGTGGGCAAGAACAACTGGATTTCACTTATGAAACCCAACAGTGTAATCGCAAAAGTGAGTTGCAGAAGATCATGCGGAAGAAATAAAAAGTACGTGATTGAAGGGTCTTACAGAAACAGATCATGCAAGGTGTTTGATGAATCCAGGAGGGTGTTGGCTGAGATTAAGAGGAAGGAGACGATGATAGAGGGAGTTTACTTTGGAGTTGAGGTTTTTCTGCTGGTTGTTCTTCCTGGTTTTGATCCTGGATTGGCAATGGCGCTGGTTACATTGTTGGATCAAATGTTTTCCTAG 639 42.1 MFRFFKTLSGTVHEEEEEEEEELQSEYGGESLSLTVWRKSLIVSCNGFTVIDSNGNLVYRVDSYGRHPQEVILMDGSGQTLLTMQRSKKLGVDRWSVYEEDLNEEGTKTSTRRSKVGKNNWISLMKPNSVIAKVSCRRSCGRNKKYVIEGSYRNRSCKVFDESRRVLAEIKRKETMIEGVYFGVEVFLLVVLPGFDPGLAMALVTLLDQMFS 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6455251 6455998 + Bma011031.1 Bma14g00595 94576

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00595 212 PANTHER PROTEIN LURP-ONE-RELATED 17 13 211 - -
Bma14g00595 212 SUPERFAMILY Tubby C-terminal domain-like 29 211 IPR025659 -
Bma14g00595 212 Pfam LURP-one-related 29 205 IPR007612 -
Bma14g00595 212 Gene3D - 28 212 IPR038595 -
Bma14g00595 212 PANTHER - 13 211 IPR007612 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00595 - - - pvy:116131314 219.935
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01701 Bma-Chr1:52122137 Bma14g00595 Bma-Chr14:6455251 2.28E-38 dispersed
Bma04g01436 Bma-Chr4:49416632 Bma14g00595 Bma-Chr14:6455251 7.11E-86 dispersed
Bma14g00595 Bma-Chr14:6455251 Bma14g01582 Bma-Chr14:32661761 1.11E-41 dispersed
Bma14g00595 Bma-Chr14:6455251 Bma07g01651 Bma-Chr7:52114115 1.77E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g52 . . . . . . . Bma14g00595 . Cmo16g00627 . . . . . Cpe14g00489 . . . . . . . . Cla07g00743 Cam07g0795 Cec07g0861 Cco07g0830 Clacu07g0776 Cmu07g0783 Cre07g1135 . . Cone6ag0816 Cone9ag0816 . . . Cme07g01610 . . . . . . . . . . . . Cma16g00578 . . . . . . . . . . . . . . . . . . . Csa04g00615 Chy07g01196 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009392 0 1 0 3 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00595 Bma_Chr14 FPKM 1.938306 1.621293 3.159915 2.661222 6.895117 6.39182 8.698126 0.428162 0.390069 0.587099