Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00599 ATGCTTTCATCAGCCGTCAGAGGTCGTAGATTGATGGCGGCCTTGTCCAACTCCTTGTCTCTGAAGCATGGGATCTCTCTTTGGTGTCCTAGCTCTGCGTCACTAAGTGGAGCTCGTCGGCCTTCTTCTTTTTCTTCTAAGAGCTTCAGAAGGAGCTATGTTGCTGCCTCCTCCGCTTTTGCCAATGAGAATAGAGAGTTCGTGATTGTTGGTGGTGGTAATGCTGCTGGTTATGCGGCAAGAACTTTCGTCGAGCACGGTATGGCCGATGGACGGCTCCTTATAGTGTCCAAAGAGGCTTATGCTCCTTATGAACGTCCGGCTTTAACCAAAGGTTATTTGTTTCCTCTGGATTCAAAACCGGCACGCTTACCTGGGTTTCATACTTGTGTTGGAACTGGTGGAGAACGACAAACTCCAGAATGGTACGAAGAAAAAGGAATTGAGATGATCTACAAAGATCCAGTGACCAATATCGATATCGAAAATCGGACCTTGGCAACTAGTTCGGGGAAACTGTTAAAGTATGGATCTCTTATAATTGCGACAGGATGCACTGCCTCAAGATTTCCCGATAAAATTGGGGGTAACCTACATGGCGTTCATTACATTAGAGATGTAGCCGATGCAGATATGCTAGTGTCAGCGTTGGAGAAAGCACAAAAGGTGGTTGTTGTTGGTGGTGGTTACATTGGCATGGAGGTTGCTGCTGCAGCTGTTGGCTGGAAACTCGACACGACAATAATATTTCCAGAGAGCCATCTTTTGCAAAGACTTTTTACTCCTTCATTGGCCCAGAAATATGAAGAACTTTACAAAGAAAATGGTGTCAAATTCTTGAAGGGGGCATCCATAAAAAATATAGAAGCTGGTGCGAATGGAAAAGTAACTGCTGTTAAACTTAATGATGGATCAACCATAGAAGCAGATACGGTTATCATTGGCGTTGGAGCAAGACCTGCTGTCAGTCCATTCGAAAGGGTGGGACTGAATGAAACTGTTGGTGGTATACAGGTTGATGGCCAGTTCCGAACTAGTATTCCAGGAATCTTTGCAGTTGGAGATGTAGCAGCATTTCCCCTGAAGATGTATGATCGTGTGGCTAGAGTGGAACATGTGGATCATGCTCGTCGATCTGCTCAACATTGTGTTAAAGCTTTACTGAGTGCACATACTCACGTATACGACTATCTTCCATACTTCTATTCGAGAGTGTTCGAATATGAAGGTAGCCCCAGGAAAATATGGTGGCAATTTTTCGGCGACAATGTTGGAGAGACTGTTGAAATCGGGAATTTCGATCCCAAGATTGCCACTTTCTGGATTGATTCTGGAAAACTGAAGGGAGTTTTGCTGGAAAGTGGAAGTCCTGAGGAATTTAAACTGCTCCCCGAACTTGCAAGGAGGCAGCCATTGGTTGATAAGTCCAAGCTTGAGAATGCGTCATCAGTTGAGAAAGCACTAGAGATATTGGAAGCTTCTTTGCAGTAG 1491 44.8 MLSSAVRGRRLMAALSNSLSLKHGISLWCPSSASLSGARRPSSFSSKSFRRSYVAASSAFANENREFVIVGGGNAAGYAARTFVEHGMADGRLLIVSKEAYAPYERPALTKGYLFPLDSKPARLPGFHTCVGTGGERQTPEWYEEKGIEMIYKDPVTNIDIENRTLATSSGKLLKYGSLIIATGCTASRFPDKIGGNLHGVHYIRDVADADMLVSALEKAQKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPESHLLQRLFTPSLAQKYEELYKENGVKFLKGASIKNIEAGANGKVTAVKLNDGSTIEADTVIIGVGARPAVSPFERVGLNETVGGIQVDGQFRTSIPGIFAVGDVAAFPLKMYDRVARVEHVDHARRSAQHCVKALLSAHTHVYDYLPYFYSRVFEYEGSPRKIWWQFFGDNVGETVEIGNFDPKIATFWIDSGKLKGVLLESGSPEEFKLLPELARRQPLVDKSKLENASSVEKALEILEASLQ 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6499290 6505021 - Bma011036.1 Bma14g00599 94580

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00599 496 PRINTS FAD-dependent pyridine nucleotide reductase signature 222 240 - -
Bma14g00599 496 PRINTS FAD-dependent pyridine nucleotide reductase signature 335 357 - -
Bma14g00599 496 PRINTS FAD-dependent pyridine nucleotide reductase signature 309 325 - -
Bma14g00599 496 PRINTS FAD-dependent pyridine nucleotide reductase signature 68 87 - -
Bma14g00599 496 PRINTS FAD-dependent pyridine nucleotide reductase signature 176 194 - -
Bma14g00599 496 PANTHER APOPTOSIS-INDUCING FACTOR 1 16 496 - -
Bma14g00599 496 Gene3D - 190 317 IPR036188 -
Bma14g00599 496 PANTHER MONODEHYDROASCORBATE REDUCTASE, CHLOROPLASTIC/MITOCHONDRIAL 16 496 - -
Bma14g00599 496 Gene3D - 400 487 IPR016156 GO:0016491|GO:0050660
Bma14g00599 496 SUPERFAMILY FAD/NAD(P)-binding domain 66 409 IPR036188 -
Bma14g00599 496 PRINTS Pyridine nucleotide disulphide reductase class-I signature 222 247 - -
Bma14g00599 496 PRINTS Pyridine nucleotide disulphide reductase class-I signature 66 88 - -
Bma14g00599 496 PRINTS Pyridine nucleotide disulphide reductase class-I signature 350 357 - -
Bma14g00599 496 PRINTS Pyridine nucleotide disulphide reductase class-I signature 310 324 - -
Bma14g00599 496 Pfam Pyridine nucleotide-disulphide oxidoreductase 67 380 IPR023753 GO:0016491
Bma14g00599 496 Gene3D - 68 383 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00599 K08232 E1.6.5.4; monodehydroascorbate reductase (NADH) [EC:1.6.5.4] - pvy:116107428 840.491
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g00599 Bma-Chr14:6499290 Bma14g01501 Bma-Chr14:30273585 1.28E-116 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g38 . . . . . . . Bma14g00599 . . . Cma15g01251 . Car15g01128 . . . . . . . . . . . . . . . . . . . Cone6ag0808 Cone9ag0805 . Csa05g00247 Chy09g01259 . . . . . . Bpe11g00669 . . . . Cmo15g01316 . . . . . Cpe13g00134 Bhi12g00305 . . . . . . Cla01g00231 . Cec01g0229 Cco01g0243 Clacu01g0234 Cmu01g0227 Cre09g2283 Lsi09g00223 . . Cme09g01794
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008344 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00599 Bma_Chr14 FPKM 1.564103 2.052634 1.130474 0.788453 0.0 0.0 0.0 1.172306 2.054655 0.873264