Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00606 ATGGGTGATAAAGAAGTAGGAAATAGAGATTTTAGCAAGTTGGAGTTGAAACCTGATCACAATAATCGACCTTTGTGGGCTTGTGCTGATGGCCGTATTTTTTTAGAGACTTTCTCATCCTTGTATAAACAAGCTTATGACTTTCTTATTGCCATCGCTGAACCAGTTTGCAGGCCAGAATCGATGCATGAATACAGCCTTACACCACACTCTCTGTATGCTGCTGTTTCTGTTGGTCTCGAAACAGAAACTATCATTGCTGTTTTGGATAAGCTGTCAAAAACTAAGCTCCCTAAAGACATGATTGATTTTATTTATGGATCTACTGCCAATTATGGAAAGGTATTGAAGAAATTGCTCAAGGATGAAGTTATAGGTAGAGCTAGAACTATATCTGAGTTACTTTTTGACCCTTTTCATTGTCCGGCAATTTATAAGAGCTTGAATGGAGGTGATGGATTTACAATTAGCAAAACAATGGGCGAGCTTGGGACTGATCAGGGTTTGCTAAATGAGGCAGAAGTTGCGGCTGCTGCTGAGGAAAAAGAGACTCATTCCTTTGAGATTGACCCTTCTCAGGTAGAGAATGTCAAACAACGTTGCTTGCCTAATGCTTTAAATTATCCAATGTTGGAGGAGTATGACTTTAGAAATGACACTGTTAATCCTGATCTTGACATGGAACTGAAGCCTCAAGCTCAACCACGGCCATATCAAGAAAAGAGTCTTAGTAAAATGTTTGGAAATGGTAGAGCAAGATCTGGTATTATTGTGTTACCTTGTGGGGCTGGAAAGTCCTTAGTTGGCGTTTCTGCTGCCTGCAGAATACGAAAAAGTTGTCTCTGTCTGGCAACAAATGCTGTTTCTGTGGATCAATGGGCTTTTCAATTCAAGCTGTGGTCAAACATTCGAGATGAACAAATTTGTCGATTCACATCTGATAGCAAAGAAAGATTTAGGGGCAATGCTGGAGTAGTTGTTACAACGTATAACATGGTTGCTTTTGGTGGCAAGCGATCAGAAGAGTCAGAAAAGATTATTGAAGAGATAAGAAATAGAGAATGGGGATTGCTTCTCATGGATGAGGTGCATGTTGTTCCTGCTCACATGTTTCGGAAGGTTATAAGCATAACCAAGTCTCATTGCAAGCTTGGACTCACTGCCACCCTTGTTCGAGAGGATGAAAGGATTACGGATCTGAACTTCCTGATTGGCCCCAAATTGTATGAAGCAAATTGGTTGGATCTTGTGAAATGTGGATTTATTGCGAATGTGCAGTGTGCGGAAGTGTGGTGTCCAATGACGAAGGAATTTTTTGCAGAATATTTGAAGAAAGAAAACTCCAAGAAAAAGCAGGCACTTTATGTGATGAACCCGAACAAGTTCAGGGCGTGTGAATTTCTTATCCGGTTTCATGAGCAGCAACGTGGTGATAAAATAATCGTTTTTGCTGACAATCTTTTTGCACTTACAGAATATGCAATGAAGCTTCGCAAGCCTATGATCTATGGTGCAACAAGCCATGTTGAGAGGACAAAAATTCTTGAAGCCTTTAAAACTAGTCGGGATGTGAATACTGTTTTTCTTTCAAAGGTAGGTGATAACTCCATAGATATCCCTGAGGCAAATGTAATTATCCAGATTTCGTCACATGCGGGGTCTAGACGTCAAGAAGCTCAACGACTGGGCCGAATTCTTCGAGCTAAGGGTAAACTTCAAGATAGAATGGCAGGAGGTAAAGAAGAGTACAATGCATTTTTCTATTCCCTAGTTTCTACTGATACACAGGAGATGTATTACTCAACTAAGAGACAGCAGTTTTTGATTGATCAAGGTTACAGTTTTAAGGTGATTACGAGCTTGCCTCCACCTGATTCAGGAGCTGATTTGAGCTTTCACCGGCTTGAGGATCAGTTAGCACTTCTCGGAAAGGTGTTAAGTGCAGGTGACGATGCTGTAGGCTTGGAGCAATTAGAAGAAGATGCAGATGATATAGCCCTTCATAAGGCTCGTCGATCCATGGGATCTATGAGTGCAATGTCAGGAGCTAATGGGAGGGTTTACATGGAATACAGTACTGGACGGAAACTTGCTGGACAAGGCCAGCTTAAGAGTAAGCCAAAGGACCCGGCAAAGCGACATTATCTGTTCAAAAAGCGGTTTGCCTGA 2169 41.4 MGDKEVGNRDFSKLELKPDHNNRPLWACADGRIFLETFSSLYKQAYDFLIAIAEPVCRPESMHEYSLTPHSLYAAVSVGLETETIIAVLDKLSKTKLPKDMIDFIYGSTANYGKVLKKLLKDEVIGRARTISELLFDPFHCPAIYKSLNGGDGFTISKTMGELGTDQGLLNEAEVAAAAEEKETHSFEIDPSQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIRKSCLCLATNAVSVDQWAFQFKLWSNIRDEQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKCGFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPDSGADLSFHRLEDQLALLGKVLSAGDDAVGLEQLEEDADDIALHKARRSMGSMSAMSGANGRVYMEYSTGRKLAGQGQLKSKPKDPAKRHYLFKKRFA 722
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6586450 6591438 - Bma011045.1 Bma14g00606 94587

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00606 722 Pfam ERCC3/RAD25/XPB C-terminal helicase 417 664 IPR032438 -
Bma14g00606 722 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 246 408 IPR014001 -
Bma14g00606 722 CDD SF2_C_XPB 427 591 - -
Bma14g00606 722 SMART helicmild6 491 569 IPR001650 -
Bma14g00606 722 CDD DEXHc_XPB 227 396 - -
Bma14g00606 722 Pfam Helicase conserved C-terminal domain 25 115 IPR032830 -
Bma14g00606 722 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 344 665 IPR027417 -
Bma14g00606 722 PANTHER DNA REPAIR HELICASE XPB1-LIKE 9 721 - -
Bma14g00606 722 Gene3D - 225 416 IPR027417 -
Bma14g00606 722 Gene3D - 417 657 IPR027417 -
Bma14g00606 722 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 463 629 IPR001650 -
Bma14g00606 722 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 410 IPR027417 -
Bma14g00606 722 SMART ultradead3 231 412 IPR014001 -
Bma14g00606 722 TIGRFAM rad25: DNA repair helicase rad25 10 719 IPR001161 GO:0003678|GO:0006289|GO:0006367
Bma14g00606 722 PRINTS Xeroderma pigmentosum group B protein signature 216 242 - -
Bma14g00606 722 PRINTS Xeroderma pigmentosum group B protein signature 247 269 - -
Bma14g00606 722 PRINTS Xeroderma pigmentosum group B protein signature 458 473 - -
Bma14g00606 722 PRINTS Xeroderma pigmentosum group B protein signature 109 128 - -
Bma14g00606 722 PRINTS Xeroderma pigmentosum group B protein signature 420 442 - -
Bma14g00606 722 PRINTS Xeroderma pigmentosum group B protein signature 478 500 - -
Bma14g00606 722 PRINTS Xeroderma pigmentosum group B protein signature 525 543 - -
Bma14g00606 722 PRINTS Xeroderma pigmentosum group B protein signature 544 569 - -
Bma14g00606 722 PRINTS Xeroderma pigmentosum group B protein signature 672 691 - -
Bma14g00606 722 PRINTS Xeroderma pigmentosum group B protein signature 581 604 - -
Bma14g00606 722 PRINTS Xeroderma pigmentosum group B protein signature 23 43 - -
Bma14g00606 722 PRINTS Xeroderma pigmentosum group B protein signature 354 374 - -
Bma14g00606 722 Pfam Type III restriction enzyme, res subunit 234 390 IPR006935 GO:0003677|GO:0005524|GO:0016787
Bma14g00606 722 PANTHER RAD25/XP-B DNA REPAIR HELICASE 9 721 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00606 K10843 ERCC3, XPB; DNA excision repair protein ERCC-3 [EC:5.6.2.4] - zju:107429869 1280.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g19 . . . . . . . Bma14g00606 . . . Cma15g01241 . Car15g01118 . . . . . . . . . . . . . . . . . Cone8ag0288 Cone12ag0294 . . . Csa05g00262 Chy09g01245 . . . . . . Bpe11g00661 . . . . Cmo15g01306 . . . . . Cpe13g00144 Bhi12g00288 . . Lac11g2069 Hepe06g1526 . Lcy12g1631 Cla01g00247 Cam01g0251 Cec01g0244 Cco01g0257 Clacu01g0249 Cmu01g0239 Cre09g2269 Lsi09g00237 . . Cme09g01780
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011686 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00606 Bma_Chr14 FPKM 163.776001 161.233963 177.113907 175.142517 174.915894 200.03653 170.096573 123.55938 120.456963 119.430817