Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00608 ATGAATATGCCTCCATTCTCTACCTCCCTGCTTTCTTCTTCTTCTTCTTCGAGTGATCTGAAGCAATTCAAGCCTGAGTCCTACGTCGTCGCCATTGACGTTGGTGGCAAGCTCTTCCAAACCACCAAACAAACCCTAACCCTTGCTGGCCCCAATTCTCTCTTCTCTAGGCTTTCTGATTGTTACACGTCGGTTCCGTCTTCTCCCCCTTTTATCGATCGGGACCCTGAGCTTTTCTCCCTCCTCCTTTCTCTTCTCAGAACTGGTTATCTTCCTTCCAAAGCCAGAAATTTCGATCTCCAAGATTTAATTTCGGAATCCCAATTTTACGGAATTGAATCTCTCTTGGTCAATTCGCTCTCCCATCCCTCGCAATTCGATGCTTTCAATCTCGAAAAAACCCTGCATTTGCCTCTCAATGGCCGAGATACCCCGTCGGCTATTGCAACGACGCCTCACGGATATATCCACGTGGCTCATGGTTCCAAAATCACCTCATTCGATTGGTCGCTGCGAAGAAAATCAACTATTTTGACTCAATTCACAGCCGTTGATTCTCTGATGGCACTATCACCGTCAGTCGCCGCAGCCGGAGCTACTGATTTCTCCGGACTGCAGATTCTCGACCTCAAAAATGGCAGGGTGAAATGGACGCTGAATTGGGAGAACGTGACAAAATCTAGCTCAACTGTTCAAGCAATAGGAACCTCGCCGGAGTTCCTCTTCGCTAGCTTTGAATCTGGCCGACGAAATTCGAATTCGATCATGATTTACGATTTGCATAGTTTATGCCCAGTATCAGAGATTGGGCACAACGAGATTTTCGGAGCAGAGATTGATTCGGCTATTCCTGCGACAAAATTGACCTGGATTTCGGGTAATAACTTGTTAATGGCTTCTGGGTCTCACAGCGGACCTTCTGGCGTATTCGGAAATATCAAATTTTGGGATTTGAGGGCCAACAGTGTGGTTTGTGAGATGAAGGAGAAGACAGATTGCTTCTCTGACATAACCGCATCTGATAATCTGGCGGCCATTTTCAAGGTCGGAGTGAACTCCGGCCAAGTTTTCTACGGCGACTTGCGTAAGCTTGGGGATGAGAATCCATGGGTGTGTCTCGGAGACGGAAGAAAAACAGCAAACGGGAAGAAGGAAGGAGCGGGGTCGAAGATCAGAAGCCATGGAAATCAAGTGCTGTGCACAAAGGGAGGGGACATAGAGCTCTGGTCGGAAGTGGGAATGAGCTCCGCCAGAAGCGAAGAAGATGGGGCGGAGGAAAGGGTTTTCAGGAAGAACGTGGTGGGGAGAGCGAGGGAGATGGGAGGGTCTAGAATAACCAGATTAGCCATTGGAGGGAACAAGATGTTCTTGACCAGAAAAGATGAGCAGTCTGTGGAGGTTTGGCAGACCTGTGGCAGAGGAATTTCATAG 1431 48.29 MNMPPFSTSLLSSSSSSSDLKQFKPESYVVAIDVGGKLFQTTKQTLTLAGPNSLFSRLSDCYTSVPSSPPFIDRDPELFSLLLSLLRTGYLPSKARNFDLQDLISESQFYGIESLLVNSLSHPSQFDAFNLEKTLHLPLNGRDTPSAIATTPHGYIHVAHGSKITSFDWSLRRKSTILTQFTAVDSLMALSPSVAAAGATDFSGLQILDLKNGRVKWTLNWENVTKSSSTVQAIGTSPEFLFASFESGRRNSNSIMIYDLHSLCPVSEIGHNEIFGAEIDSAIPATKLTWISGNNLLMASGSHSGPSGVFGNIKFWDLRANSVVCEMKEKTDCFSDITASDNLAAIFKVGVNSGQVFYGDLRKLGDENPWVCLGDGRKTANGKKEGAGSKIRSHGNQVLCTKGGDIELWSEVGMSSARSEEDGAEERVFRKNVVGRAREMGGSRITRLAIGGNKMFLTRKDEQSVEVWQTCGRGIS 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6613933 6615363 + Bma011048.1 Bma14g00608 94589

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00608 476 PANTHER BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER 3 470 IPR045068 -
Bma14g00608 476 Pfam BTB/POZ domain 30 118 IPR003131 GO:0051260
Bma14g00608 476 SUPERFAMILY POZ domain 29 118 IPR011333 -
Bma14g00608 476 MobiDBLite consensus disorder prediction 1 20 - -
Bma14g00608 476 Gene3D Potassium Channel Kv1.1; Chain A 19 128 IPR011333 -
Bma14g00608 476 PANTHER PROTEIN BINDING PROTEIN 3 470 - -
Bma14g00608 476 SMART BTB_4 28 127 IPR000210 GO:0005515
Bma14g00608 476 SUPERFAMILY WD40 repeat-like 129 421 IPR036322 GO:0005515
Bma14g00608 476 Gene3D - 153 474 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00608 - - - zju:107429870 684.871
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma12g00073 Bma14g00608 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g00608 Bma-Chr14:6613933 Bma14g00702 Bma-Chr14:7657809 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g1 . . . Bda08g00515 . Bpe07g00104 . Bma14g00608 . Cmo16g00658 Cma02g01438 . Car02g01208 . . . Cpe05g00646 . . . . . . . Cla07g00786 Cam07g0848 Cec07g0901 Cco07g0883 Clacu07g0823 Cmu07g0826 Cre07g1184 . . . . . Csa05g00266 . . . . Bda07g00484 . . Bpe11g00661 . Bma12g00073 . Cmo02g01473 Cmo15g01132 . Cma16g00602 Car06g00910 . . Cpe13g00146 Bhi12g00184 . . . . . . Cla01g00250 Cam01g0255 Cec01g0247 Cco01g0261 Clacu01g0253 Cmu01g0243 Cre09g2266 Lsi09g00241 . Chy07g01225 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010340 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00608 Bma_Chr14 FPKM 0.422545 0.622703 1.162512 0.965314 2.03214 1.359094 1.745072 0.933688 0.887143 0.782913