Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00624 TTAAACATGGATTCTGGTTTTGTTTCTTCCATCAAGTTCAGCGAGCACCGTAGCCACGTTAAGCTTGTTTCCCCGCCGGAAATAAGGCCTAAACTGGTGAGGATAACAGTGACCGATGGAGACGCTACTGACTCATCCAGTGACGATGAAGATGTAGTGTTTCCTCGTCAAAGGCTCAAGAAGTTTGTGACTGACATTACAATGGAGTCGCCGTCTTCCTGTGAAAGAAATGTCAAGTGGAGGCAGAGCAAGGGTACCAAAACTTGCCGGAAAAGCTCCATCGAAAAAACAAGATTTCCTGCAGCGACCCAAAAGCCGTTGAAAGTTACCGGTGGTAAGAAGTTCCGAGGCGTGAGGCAGAGGCCATGGGGAAAATGGGCCGCTGAAATCAGAGATCCTCTCCGACGGGTACGTCTCTGGTTAGGTACTTACGACACTGCAGAAGAAGCAGCCATGGTCTACGACAACGCCGCTATTAAGCTTCGTGGGCCTGATGCTTTGACTAATTTTGCTATTCAACCTCCCAAGCCGACCTCTGTTCTACGATGTCCTTCACCTTCAAATGAAGAGGCTGACTCAGAAAGCCCCGCCTCTTCTGCCATTCTTAAGGAAAACTATGACGGCGGCGAGGTCGGAAGTGAATCCTGCGTCTCGGGAAAAATCTCCGAGTTTGAGACCTTCATCCCGAGCGATATATTCGACTTTGACTTCCCCATTCCAAGCCTGTTTGAGGAAGCGAGTCTACAGGAAGACGTCGTTTTAGAAGATGATTACAGTAACTTGTTCAGTTCGAACGACGAATTGGGGTTTGGATTTTCAACGTGGCGAGTAGACGATGAGTTCCAGGACATCGGCGACATATTCGGGTTGGATCCTCTAATGGCGCTCTGA 891 48.93 LNMDSGFVSSIKFSEHRSHVKLVSPPEIRPKLVRITVTDGDATDSSSDDEDVVFPRQRLKKFVTDITMESPSSCERNVKWRQSKGTKTCRKSSIEKTRFPAATQKPLKVTGGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIKLRGPDALTNFAIQPPKPTSVLRCPSPSNEEADSESPASSAILKENYDGGEVGSESCVSGKISEFETFIPSDIFDFDFPIPSLFEEASLQEDVVLEDDYSNLFSSNDELGFGFSTWRVDDEFQDIGDIFGLDPLMAL 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6744262 6745235 + Bma011066.2 Bma14g00624 94605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00624 296 Pfam AP2 domain 114 163 IPR001471 GO:0003700|GO:0006355
Bma14g00624 296 ProSiteProfiles AP2/ERF domain profile. 114 171 IPR001471 GO:0003700|GO:0006355
Bma14g00624 296 Gene3D AP2/ERF domain 113 173 IPR036955 GO:0003700|GO:0006355
Bma14g00624 296 PIRSF PTI6 6 282 IPR017392 GO:0003700
Bma14g00624 296 CDD AP2 113 173 IPR001471 GO:0003700|GO:0006355
Bma14g00624 296 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Bma14g00624 296 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Bma14g00624 296 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 8 292 - -
Bma14g00624 296 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 8 292 - -
Bma14g00624 296 SUPERFAMILY DNA-binding domain 114 172 IPR016177 GO:0003677
Bma14g00624 296 SMART rav1_2 114 177 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00601 Bma-Chr12:27326539 Bma14g00624 Bma-Chr14:6744262 5.93E-96 dispersed
Bma14g00624 Bma-Chr14:6744262 Bma14g01978 Bma-Chr14:43056286 1.35E-52 dispersed
Bma12g00051 Bma-Chr12:1076420 Bma14g00624 Bma-Chr14:6744262 4.47E-94 wgd
Bma14g00624 Bma-Chr14:6744262 Bma05g00851 Bma-Chr5:46063794 1.63E-65 wgd
Bma14g00624 Bma-Chr14:6744262 Bma07g01679 Bma-Chr7:52368266 6.39E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58329 PF00847 AP2 5.80E-14 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00624 - - pvy:116145351 260.766