Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00626 ATGGACACTGCGGACGGTGGACATCTCCTAAACAAAGGTAGGCCAGAGGTGCCCCTGGAGAGCATGTATGCGCAAAAACCTGAAGCCTGTAACATTTTGGGATCTCAAGAAATGCTTATACCTGTCGAAGGTGGGAATTGTCCTCGTGAATTAGAGGGATTCTTGGATAGTAAGACCGTGATTAGGAGCGATAAACACGTGGATGCATCAGATCACCCATTTTCCATCCCCCGCTGCATGGATGATGCTGGTGTTATGGTTGAAGAGTTAACTGTAAAAAATTATGATGGTTCAAATTTAGCTATTGTTGGCACTTCAAATAATAGGGGGAGAATGCTTACTAGGCAGAACCAGTGGCAACAGCTATATCAGCTGGGAAATGGATCAGGAAGTGGGTGTACTCACAATGAGACTCCATACAAGGACACTGGTCAGGCGATGTCAAGTGGTTTGGAGGATGTTGGATACTCGACTTTTCCTGAATTTTTGGCTCAAAAAGCAATTACTGACAATTGTGGTGAGGACCTTGAAGAATTTGTAAATACTGAAAATAAAGTGGTTTCAGGGAACGCTCATGGTGCCCTGCGAACTAAGATTATATCAAAATCAGGTTTCTCTGAGTTTTTTGTCAAGAAGACACTAAAGGGTAAGGGCATCATGCAAAGGGGGCCGCTTCATTCAGGTTTCAATGTTGAGCCTAGAAACAAGAAAACTCCAAAGGCTGATAGTGGTATTATAGTGGCTTCTACGGCATTACAGCCTAATTTTAAAAATGTTACAGCCTCTCCATGTGTGAAATCTGAGCCGAAAGTCTGTAGCTCTGCTATTGGAGTTAGTCTACAAGAATGGCTAAAAGTTGGCCATAAAAAGGTGAATAAACTCGAGCGCTTGAATATATTTAAGCAGATTTTGGAACTGCTGGATCATGCTCACTCTCAAGGAGTTGTTTGGCATGACATACGGCCATCTTCCTTCAGGCTATTAGCTTCAAATCAGGTCAAGTATAATGGGGCGGCTATACAAGAAGAGATGCGAGAAAGTTCTATGGATGGAGATTTTCAGTACTTGGGGAAGAGTTTGATAAAGAAAAGACTATTAGAGCAGGGACCATTTCCTTCCTTACATGAAACTTTAAGAAAGAAAAAGTTCATTCAGAATACAGACTATTTGGAAAAGTTACCTCAAACTAATTTGACATCTGGCATTGGACTTGAAATTGGAAATTCTTCTAGCAAATTGGGTACTCACGGGAATCGAAGCAAGTATACTGGACTTTGTTCCGTTTATTCTGGTCATCCGAATCTATCAAGTGAGCACTTGGAAGAAAACTATTATGCAAGTCCTGAGGAACTCAATGGTCAAGGGCGCACAACTTCTTCAAATATATACTCTCTGGGAGTCCTCTTTTTTGAGTTGCTCGGTGATTTTGACTTTGATGGTGCACGTGCTGCTGCATTGTCTGATTTACGTCATAGGATTCTCCCTCCAAATTTTTTGTCAGAAAATCCACGGGAAGCTGGATTTTGCCTTTGGCTGCTTCATCCTGAACCTGCATCTCGACCCTCAACACGGAAAATTTTAGAATATGAAGTAATGATATTAACTCCACCAGCATCTACAGAAGATTTCTCATCGGCCCTTGATCAAGATGGTACAGAATCTGAATTATTGTTGCAATTTCTCGTTTCTTTACAAGAACAGAAGCAGAAGCTTGCGGCAAAGTTACTGGAAGACAATCAGAGCTTAGAAGCAGACATAGAAGAAATTGAAAGAAGGCACAATTCGAACAAATCCTTGGTTCATTCGCACACTGACTCCTTCAATGAAATGGAGAAATGTATTGTTCGGAAAGCAAATTCAAGCTTTGATATGGTTTCTCAGCTGTCTGTTTTTCCTAATACCACTGACATGAGGTTTGAAAAGAATATCGCCCAGCTTGAAACTGCATACTTCTCAACGAGATCCAAAGTTCAGCTTCCTGAGAATGATTCAGTAGTACGAACAGACAATGGTTTATTGAGAACTCGGGAGAACTGCAATCAGGCATGGCCAAGGCAAAGTGAAGAGAAAACACGTCCTGTGGATTACTTGGGAGACTTTTTTGATGGCTTTTGCAAATATTCTCGCTATAGTAAATTTGAAGTGCGTGGAACATTAAGAAATTCAGATTTCAACAGCTCTTCCAATGTGATTTGTTCATTGAGTTTTGATCGTGATGGGGACTATTTTGCAGCTGCGGGAGTGTCGAAGAAAATAAAAATATTTGGCTTTAATGCAGTCTTTAATAACTTGGTTGATATTCATTATCCAGCTGTTGAGATGATGAACAAATCAAAGCTCAGCTGCGTTTGCTGGAACAGCTATATTAAGAACTATCTGGCTTCAACTGATTATGATGGTGCAGTCAAGTTATGGGATGCATCCACAGGGCAAGAGACTTCTCAATTCAAGGAACATGAAAGGAGGGCCTGGTCTGTCGACTTTTCTCAAAAAAACTCTTTAGGCACAATCAAGAACATTGCAAATGTATGCTGTGTTCAGTTCTCTGCTCACTCTACTCATTTGCTGGCGTTTGGGTCTGCTGATTACCGAACCTATTGCTATGATCTTAGGAATACTAAAGCTCCATGGTGTATATTGGGTGGTCATGGCAAAGCTGTAAGCTATGTGAAATTCTTGGACTCTGAGACCCTTGTTTCTGCCTCTACTGACAGCACTCTGAAGCTATGGGATCTCAACCGAACAAATCCTTGTGGCTTGTCCACCAACGCCTGCAATTCAACTTTCAGCGGGCACACTAATGAGAAGAACTTTGTTGGTTTGTCCGTTTCTGATGGTTATATCGCTTGTGGATCTGAGACAAACGAGGTATGCGCTTACTATCGATCTCTTCCCATGCCGATCACCTCCCTCAAGTTTGGCTCGATAGACCCAGTTTGTGGGAAGGAGACTGATGATGACAACGGGCAGTTTGTTTCCAGCGTTTGCTGGAGAGGAAAATCTGACATGCTCATCGCAGCCAATTCAAGCGGCTGTATAAAAGTGTTGCAAATGGTTTGA 3060 41.83 MDTADGGHLLNKGRPEVPLESMYAQKPEACNILGSQEMLIPVEGGNCPRELEGFLDSKTVIRSDKHVDASDHPFSIPRCMDDAGVMVEELTVKNYDGSNLAIVGTSNNRGRMLTRQNQWQQLYQLGNGSGSGCTHNETPYKDTGQAMSSGLEDVGYSTFPEFLAQKAITDNCGEDLEEFVNTENKVVSGNAHGALRTKIISKSGFSEFFVKKTLKGKGIMQRGPLHSGFNVEPRNKKTPKADSGIIVASTALQPNFKNVTASPCVKSEPKVCSSAIGVSLQEWLKVGHKKVNKLERLNIFKQILELLDHAHSQGVVWHDIRPSSFRLLASNQVKYNGAAIQEEMRESSMDGDFQYLGKSLIKKRLLEQGPFPSLHETLRKKKFIQNTDYLEKLPQTNLTSGIGLEIGNSSSKLGTHGNRSKYTGLCSVYSGHPNLSSEHLEENYYASPEELNGQGRTTSSNIYSLGVLFFELLGDFDFDGARAAALSDLRHRILPPNFLSENPREAGFCLWLLHPEPASRPSTRKILEYEVMILTPPASTEDFSSALDQDGTESELLLQFLVSLQEQKQKLAAKLLEDNQSLEADIEEIERRHNSNKSLVHSHTDSFNEMEKCIVRKANSSFDMVSQLSVFPNTTDMRFEKNIAQLETAYFSTRSKVQLPENDSVVRTDNGLLRTRENCNQAWPRQSEEKTRPVDYLGDFFDGFCKYSRYSKFEVRGTLRNSDFNSSSNVICSLSFDRDGDYFAAAGVSKKIKIFGFNAVFNNLVDIHYPAVEMMNKSKLSCVCWNSYIKNYLASTDYDGAVKLWDASTGQETSQFKEHERRAWSVDFSQKNSLGTIKNIANVCCVQFSAHSTHLLAFGSADYRTYCYDLRNTKAPWCILGGHGKAVSYVKFLDSETLVSASTDSTLKLWDLNRTNPCGLSTNACNSTFSGHTNEKNFVGLSVSDGYIACGSETNEVCAYYRSLPMPITSLKFGSIDPVCGKETDDDNGQFVSSVCWRGKSDMLIAANSSGCIKVLQMV 1019
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6752897 6758636 - Bma011068.1 Bma14g00626 94607

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00626 1019 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 880 913 - -
Bma14g00626 1019 ProSiteProfiles Trp-Asp (WD) repeats profile. 880 913 IPR001680 GO:0005515
Bma14g00626 1019 PANTHER PROTEIN SPA1-RELATED 2 20 1019 IPR044630 GO:0009640
Bma14g00626 1019 SUPERFAMILY WD40 repeat-like 729 1017 IPR036322 GO:0005515
Bma14g00626 1019 SMART serkin_6 119 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma14g00626 1019 ProSiteProfiles Protein kinase domain profile. 119 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma14g00626 1019 Pfam WD domain, G-beta repeat 879 911 IPR001680 GO:0005515
Bma14g00626 1019 Pfam WD domain, G-beta repeat 727 755 IPR001680 GO:0005515
Bma14g00626 1019 ProSitePatterns Trp-Asp (WD) repeats signature. 793 807 IPR019775 -
Bma14g00626 1019 Gene3D Transferase(Phosphotransferase) domain 1 277 535 - -
Bma14g00626 1019 SUPERFAMILY Protein kinase-like (PK-like) 277 530 IPR011009 -
Bma14g00626 1019 ProSiteProfiles Trp-Asp (WD) repeats profile. 773 815 IPR001680 GO:0005515
Bma14g00626 1019 Gene3D - 832 1019 IPR015943 GO:0005515
Bma14g00626 1019 Gene3D - 700 831 IPR015943 GO:0005515
Bma14g00626 1019 SMART WD40_4 830 869 IPR001680 GO:0005515
Bma14g00626 1019 SMART WD40_4 873 911 IPR001680 GO:0005515
Bma14g00626 1019 SMART WD40_4 922 961 IPR001680 GO:0005515
Bma14g00626 1019 SMART WD40_4 977 1017 IPR001680 GO:0005515
Bma14g00626 1019 SMART WD40_4 712 756 IPR001680 GO:0005515
Bma14g00626 1019 SMART WD40_4 767 806 IPR001680 GO:0005515
Bma14g00626 1019 Coils Coil 565 599 - -
Bma14g00626 1019 ProSitePatterns Trp-Asp (WD) repeats signature. 898 912 IPR019775 -
Bma14g00626 1019 PANTHER PROTEIN SPA1-RELATED 2 20 1019 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00626 K16240 SPA1; protein suppressor of PHYA-105 1 - csv:101211350 1158.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g00239 Bma-Chr14:2885522 Bma14g00626 Bma-Chr14:6752897 4.12E-155 dispersed
Bma14g00626 Bma-Chr14:6752897 Bma14g00910 Bma-Chr14:10268287 2.97E-91 dispersed
Bma14g00626 Bma-Chr14:6752897 Bma15g00557 Bma-Chr15:6406443 1.06E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g105 . . . . . . . Bma14g00626 . . Cma02g01396 Cma15g01269 Car02g01175 Car15g01144 . . Cpe05g00378 . . . . . . . . . . . . . . Cone8ag0255 Cone12ag0261 . . . Csa05g00216 Chy09g01283 . . . Bda07g00466 . . Bpe11g00642 . . . Cmo02g01431 Cmo15g01339 . . . . . Cpe13g00119 Bhi12g00161 . . Lac11g2015 Hepe06g1490 . Lcy12g1581 Cla01g00199 Cam01g0205 Cec01g0199 Cco01g0204 Clacu01g0201 Cmu01g0197 Cre09g2310 Lsi09g00187 . . Cme09g01828
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005844 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00626 Bma_Chr14 FPKM 7.889558 11.353129 9.003805 9.784684 9.993858 7.621826 9.161174 17.532763 18.027205 21.171108