Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00633 ATGGAGAGCCGATTGGTCGAGATGTGCATCGACTCGGCGTGCCGGAGCAGTGTTAGCATCGACAAATGGCGCAGGCAGACGCGGACCCTTCACCGCCTACCCTCTCACCTTGCAGATGAGCTCCTTCGCCGCCTTCATACTCGTCGTCTGCTTTACCCTTCTTTGCTGGAAATCTTCAAATTTAGTGTAGAAGAGATAAATTTCAGTGGTGATAATGCTGTGGATGCAGAATGGATGGCCTACTTGGGAGCTTTTTTGACATTACGTTATCTGAATCTTGCTGACTGCCATAGAATTACTAGTTCTGCTCTTTGGTCTATATCAGGGATGGCTAGTTTGAAAGAGCTAGACCTTTCGAGATGTCTCAAGTTTACTGATGCTGGAATTATGCATCTTCTATCCGTATCAACTCTAGAAAAGCTATCCATTTCAGAAACACGTGTAACCTCACATGGTATTAAGCTTCTTGCTTCTCTGAAAAACTTGAGTTTCTTGGACTTGGGTGGTTTGCCTGTTACAGATCAATCTTTGAATTACCTTCAGGTCCTTACAAACCTCAAGTACCTCGATATATGGGGAAGTAAAATAACTGATCAAGGATCTATTGTCCTTCCAAAGTTTACAATGTTAAGCTTCCTGAATCTTGCTTGGACTAGCGTCACACAGTTGCCAAAATTGCCTTCTCTTGAAATCTTGAACATGAGCAATTGTACAATTAACTCTTCACAGAAAGGGTTTTGTAACAAAGTTCCTCTACAGAAGCTTATTGTCACTGGAGCAACATTTATAAATGAGGATGAAATTTTGGGAAGTATTGAAGCCATTTCTCTATGCAGTCTGGATGTCTCAAACTCTTCCCTTCGTAGTTTCTCATTCCTACCTCAGATGAAAGCTCTGCAACACTTGGATCTTAGCTCTACCATGATCGAAAATGATTCAATGGAGCTCCTTGCATTTGTAGGAGCTAGTTTGAAAACCTTAAATCTCAGCAACACCAAGGTTAATTCCCTGGGAGTTGGGCTTTTGGCTGGAGAAGTACCAAATCTCGAAACTATATCATTAGCGCACACACTAATTGATGATGCAGCAATCATATGTCTCAGCAGGATGCCCTCTCTGAAGGCTATAAACTTAAACAGTACAAACATCAAAGGTATAATTCCTCGGTATGGTACAGAGCCAGAATATCTATCCTTTACTGCTCTACAAGAGCTTAGATTTTTAGAAGTGTTAAATTTGGAGCAGACTCGAGTTAGGGATGGAGCCTTATGCCCTTTATCAAGTCTTAGAGAATTGCATAAAGTCAGTCTTAAAAGTGCTTCTCTTACTGACAGCGCCCTTTACTATTTGTCATCTATCCCAAAGCTAGCTAGTCTCAGCATTCGAGATGCAGTAGTGACGAACTCTGGGCTTGATTTGCTGAAGCCCCCATCCACCTTAATGAAAATGGATTTGAGGGGCTGTTGGCTCTTGACTGGGGATGCAATATTGGCATTTGGTAGGAGGTTTCCTCAAATCCAAGTGATGCATGAGCTTACTCATCTCTCCCCATCGACTCACACTGGGCACTCTAATAGCACTAGATTTGCTTCAAGGATTTCAAAAGTGAAGGAGAAGAATAGAGAAACACAATTCTCACAGAGTTTAATAGATCAAAGATTAAAATATAATAGGGGAGAGTTGCTTGCACTGCAGTACTCGTCTGAATGTCCCATATCCATCAATGCTAGAGCTGCCTTACTGGATGAAATGGAATCAGGATTACATTCTGGTGAATCCTAA 1782 41.86 MESRLVEMCIDSACRSSVSIDKWRRQTRTLHRLPSHLADELLRRLHTRRLLYPSLLEIFKFSVEEINFSGDNAVDAEWMAYLGAFLTLRYLNLADCHRITSSALWSISGMASLKELDLSRCLKFTDAGIMHLLSVSTLEKLSISETRVTSHGIKLLASLKNLSFLDLGGLPVTDQSLNYLQVLTNLKYLDIWGSKITDQGSIVLPKFTMLSFLNLAWTSVTQLPKLPSLEILNMSNCTINSSQKGFCNKVPLQKLIVTGATFINEDEILGSIEAISLCSLDVSNSSLRSFSFLPQMKALQHLDLSSTMIENDSMELLAFVGASLKTLNLSNTKVNSLGVGLLAGEVPNLETISLAHTLIDDAAIICLSRMPSLKAINLNSTNIKGIIPRYGTEPEYLSFTALQELRFLEVLNLEQTRVRDGALCPLSSLRELHKVSLKSASLTDSALYYLSSIPKLASLSIRDAVVTNSGLDLLKPPSTLMKMDLRGCWLLTGDAILAFGRRFPQIQVMHELTHLSPSTHTGHSNSTRFASRISKVKEKNRETQFSQSLIDQRLKYNRGELLALQYSSECPISINARAALLDEMESGLHSGES 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6792083 6795122 + Bma011075.1 Bma14g00633 94614

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00633 593 Pfam Leucine Rich repeat 112 132 IPR001611 GO:0005515
Bma14g00633 593 PANTHER RECEPTOR-LIKE PROTEIN 14 1 584 - -
Bma14g00633 593 SUPERFAMILY RNI-like 65 385 - -
Bma14g00633 593 Gene3D Ribonuclease Inhibitor 159 253 IPR032675 -
Bma14g00633 593 PANTHER F-BOX/LRR-REPEAT PROTEIN 13 1 584 - -
Bma14g00633 593 Gene3D Ribonuclease Inhibitor 393 513 IPR032675 -
Bma14g00633 593 Gene3D Ribonuclease Inhibitor 10 147 IPR032675 -
Bma14g00633 593 Gene3D Ribonuclease Inhibitor 254 392 IPR032675 -
Bma14g00633 593 Pfam Leucine rich repeat 323 383 IPR001611 GO:0005515
Bma14g00633 593 SUPERFAMILY RNI-like 399 506 - -
Bma14g00633 593 SMART LRR_CC_2 159 183 IPR006553 -
Bma14g00633 593 SMART LRR_CC_2 346 370 IPR006553 -
Bma14g00633 593 SMART LRR_CC_2 226 245 IPR006553 -
Bma14g00633 593 SMART LRR_CC_2 110 135 IPR006553 -
Bma14g00633 593 SMART LRR_CC_2 85 109 IPR006553 -
Bma14g00633 593 SMART LRR_CC_2 429 453 IPR006553 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00633 - - - qsu:112023903 663.299
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g00633 Bma-Chr14:6792083 Bma01g02556 Bma-Chr1:83230618 3.21E-11 dispersed
Bma14g00633 Bma-Chr14:6792083 Bma09g00894 Bma-Chr9:48239822 7.81E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g130 . . . . . . . Bma14g00633 . . . . . . . . . . . . . . . . Cla07g01424 Cam07g1525 Cec07g1621 Cco07g1581 Clacu07g1513 Cmu07g1483 Cre07g1860 . . . Cone9ag0850 . . . . . . Bda07g00458 . . Bpe11g00635 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00655 Chy07g01156 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005843 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 7 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00633 Bma_Chr14 FPKM 12.286631 14.426003 14.255932 14.812281 9.316077 9.115184 8.844918 4.499315 3.819756 4.467322