Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00658 ATGTCCCATTATCAGGGGGATAATTCTGATTACATGGCTGATGAGTATGAAATGGAAGTCGGAGATGATGATATGGATGATGAGTGTCATGAAATAGAAATGGATGGGTCAGAGTCTGATGTCGATGATTTTGACTCGAGTAGCAGAGTAGTTGATACCACTTCGGCTCAAGCAAGAAGAGGAAAAGATATCCAGGGAATTCCTTGGGACAGGCTGAGTATTACTAGGGAAACGTACCGGCAGACTAGGTTAGAGCAGTACAAGAACTACGAAAATATTCCTAATTCTGGACATGGGTCAGGGAAGGACTGCATTAATACAAAGAAAGGCTGTGTGTATTACGAGTTTCGGCGAAACTCAAGATCAGTGAAATCAACCATTCTTCACTTTCAGTTAAGGAACCTGGTATGGTCTACATCAAAACATGACGTATACCTCATGTCACATTTTTCAGTGATTCATTGGTCTTCTCTAACTTGCACAAAGTCTGAAGTTCTCAATGTTTCTGGACACGTGGCACCAACTGAGAAACATCCTGGAAATCTATTGGAAGGATTTACCCAAACCCAAGTCAGTACTCTTGCTGTAAAAGATAAGCTTTTAGTTGGTGGAGGATTCCAGGGAGAGCTTATTTGCAAGAGACTAGACAGACAAGGCGTTAGTTTTTGTTCCAGGACAACTTACGATGATAATGCCATCACCAATGCTATTGAAATTTACGGCAGTTCGAGTGGTGCAGTTCACTTCACAGCCTCAAATAATGATTGTGGAGTTAGAAACTTTGATATAGAGAAGTTTCAGCTCACTAAGCATTTTGGTTTTCCTTGGCCTGTGAATCACACTTCTCTGAGTCCAGATGGTAAACTAATTGTGATTGTGGGTGACAACCCAGATGGTTTATTGGTGGACTCCCAAACTGGAAAGACGGTCATGCCTTTATGTGGGCACTTAGACTTTTCATTTGCATCGGCCTGGCATCCCGACGGTGTCACCTTTGCCACTGGAAACCAAGATAAAACCTGCCGGATTTGGGACGTAAGAAATCTATCCAAGTCAGTTGCAGTTCTGAAGGGGAATCTTGGAGCTACAAGGTCGATAAGGTATAGTTCTGATGGTAAATATATGGCAATGGCAGAGCCTGCAGACTTTGTGCATGTGTATGACGTGAGCAAGGGTTATGCGAGAGAGCAAGAAATTGATTTTTTTGGCGAATTTCGGGCATATCTTTCAGTCCCGACACTGAATCGCTTTTTATTGGTGTGTGGGATCGTACTTATGGAAGCCTCCTCGAGTATGGACGATATCGTAATTACTCGTACCTTGACGCACTTTTTTGAGGTTTGCTATGCGAATAAATTTGATTGTGTGGTGATCAATTAA 1380 42.39 MSHYQGDNSDYMADEYEMEVGDDDMDDECHEIEMDGSESDVDDFDSSSRVVDTTSAQARRGKDIQGIPWDRLSITRETYRQTRLEQYKNYENIPNSGHGSGKDCINTKKGCVYYEFRRNSRSVKSTILHFQLRNLVWSTSKHDVYLMSHFSVIHWSSLTCTKSEVLNVSGHVAPTEKHPGNLLEGFTQTQVSTLAVKDKLLVGGGFQGELICKRLDRQGVSFCSRTTYDDNAITNAIEIYGSSSGAVHFTASNNDCGVRNFDIEKFQLTKHFGFPWPVNHTSLSPDGKLIVIVGDNPDGLLVDSQTGKTVMPLCGHLDFSFASAWHPDGVTFATGNQDKTCRIWDVRNLSKSVAVLKGNLGATRSIRYSSDGKYMAMAEPADFVHVYDVSKGYAREQEIDFFGEFRAYLSVPTLNRFLLVCGIVLMEASSSMDDIVITRTLTHFFEVCYANKFDCVVIN 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 7104284 7106862 - Bma011104.2 Bma14g00658 94639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00658 459 Gene3D - 157 416 IPR015943 GO:0005515
Bma14g00658 459 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 1 407 - -
Bma14g00658 459 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 313 348 - -
Bma14g00658 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 354 IPR001680 GO:0005515
Bma14g00658 459 Pfam WD domain, G-beta repeat 309 345 IPR001680 GO:0005515
Bma14g00658 459 SMART WD40_4 349 388 IPR001680 GO:0005515
Bma14g00658 459 SMART WD40_4 306 345 IPR001680 GO:0005515
Bma14g00658 459 MobiDBLite consensus disorder prediction 35 57 - -
Bma14g00658 459 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 1 407 - -
Bma14g00658 459 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 188 392 IPR011047 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00658 - - - jre:108985970 679.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00994 Bma-Chr4:16120005 Bma14g00658 Bma-Chr14:7104284 0 dispersed
Bma06g01409 Bma-Chr6:50850261 Bma14g00658 Bma-Chr14:7104284 0 dispersed
Bma14g00658 Bma-Chr14:7104284 Bma04g00486 Bma-Chr4:4250811 8.23E-08 dispersed
Bma14g00658 Bma-Chr14:7104284 Bma05g01238 Bma-Chr5:51761696 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g783 Blo03g00480 Blo03g01493 Bda07g00435 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1270 Cone15ag1296 . . . . . . . . Bpe11g00613 . . Bma14g00658 . . Cmo09g00636 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000780 3 4 6 6 3 2 3 2 2 2 2 2 3 2 2 2 2 4 3 2 2 2 2 2 3 2 1 11 7 2 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00658 Bma_Chr14 FPKM 72.208755 75.550598 61.176117 56.689098 42.916889 52.883324 40.514103 39.468384 41.213795 41.8125