Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00666 ATGGGTTCTACTTCAGTGGTGGATTTACTAGAGGCCTCCTCAGGGGTTCATTTTTCTGGACTGCACTTGAATAATTTGAAGCAACTTAATGAACTGGAGGATCAACTTTCAGTTTCAGCGACTGAAAACATAGATCACCAGCCTTTTGTAATTGGAGTTTCTGGGGGAGCTGCCTCTGGTAAGACTATTGTTTGTGATATGATTATTCAGCAACTTCATGATCAACGTGTCGTTCTGGTTAATCAGGACTCTTTCTACCATAATTTAACTCCTGATGATCTCACAAGAGTAAACGAGTACAACTTTGACCATCTTGATGCGTTTGACACGGAACAGCTTTTAAGTTCCATGGAGAAGCTGAGGCATGGCCAGGCTGTAAACATTCCAGAGTATGATTTCAAGAGTTACAAAAATGATGTGTTGCCACCGAGAAGGGTTAACCCTTCAGATGTCATCATTTTGGAAGGAATACTTGTGTTTCATGACCCCCGCATTCGAGAGTTGATGAACATGAAAATATTTGTTGATACAGATGCTGATGTTCGTCTAGCAAGGAGGATAAGGCGTGATACTGTTGAGAAGGGTAGAGATATTGCTGCTGTTCTCGATCAGTATGCAAAATTTGTAAAGCCAGCATTTGATGACTTCATCCTTCCGACAAAGAAATATGCTGATGTCATCATTCCCAGAGGAGGAGATAATCCTGTTGCTATTGATTTAATTGTACAGCATATTCGTACGAAACTCGGTCAACATGATCTCTGTAAAATATACCCCAACTTATATGTCATTCATTCAACTTTTCAGATAAGAGGAATGCATACCCTAATACGGGATGCTAAAACAACAAAGCATGATTTTGTCTTCTACTCTGACAGATTGATCCGTCTGGTTGTTGAGCATGGTCTGGGACACCTGCCGTTCACAGAAAAGCAGGTGCTTACCCCTACTGACTCTGTATATACCGGCGTGGATTTCTCTAAGAGGTTATGTGGTGTCTCTGTCATCAGGAGTGGCGAAAGTATGGAGAATGCTTTACGAGCATGTTGTAAAGGCATCAAGATTGGCAAGATTCTTATTCACAGGGAAGGTGATAACGGCCAGCAGCTAATTTATGAAAAATTGCCTCAAGACATCTCAGATAGGCATGTGTTACTATTGGATCCAATCCTCGGCACAGGTAATTCGGCCGTCCAAGCAATTTCCCTACTCATAAGAAAGGGTGTGCCGGAGTCCAACATTATATTTCTGAATCTTATTTCAGCTCCCCAAGGTGTTCATGTGGTGTGCAAAAGCTTTCCAAGAATAAAGATAGTGACATCTGAGATCGAAGTTGGCTTGAACGACGATTTCCGTGTCATCCCTGGCATGGGTGAGTTTGGAGATCGATATTTTGGCACAGACGACGACGACCAAGAAATCTCACCCCCCTTTCAATAA 1440 42.15 MGSTSVVDLLEASSGVHFSGLHLNNLKQLNELEDQLSVSATENIDHQPFVIGVSGGAASGKTIVCDMIIQQLHDQRVVLVNQDSFYHNLTPDDLTRVNEYNFDHLDAFDTEQLLSSMEKLRHGQAVNIPEYDFKSYKNDVLPPRRVNPSDVIILEGILVFHDPRIRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIAAVLDQYAKFVKPAFDDFILPTKKYADVIIPRGGDNPVAIDLIVQHIRTKLGQHDLCKIYPNLYVIHSTFQIRGMHTLIRDAKTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVLTPTDSVYTGVDFSKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPQDISDRHVLLLDPILGTGNSAVQAISLLIRKGVPESNIIFLNLISAPQGVHVVCKSFPRIKIVTSEIEVGLNDDFRVIPGMGEFGDRYFGTDDDDQEISPPFQ 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 7224403 7229438 - Bma011115.1 Bma14g00666 94647

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00666 479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 241 IPR027417 -
Bma14g00666 479 Pfam Uracil phosphoribosyltransferase 266 467 - -
Bma14g00666 479 Pfam Phosphoribulokinase / Uridine kinase family 50 236 IPR006083 GO:0005524|GO:0016301
Bma14g00666 479 PRINTS Uridine kinase signature 180 190 - -
Bma14g00666 479 PRINTS Uridine kinase signature 123 138 - -
Bma14g00666 479 PRINTS Uridine kinase signature 78 89 - -
Bma14g00666 479 PRINTS Uridine kinase signature 216 229 - -
Bma14g00666 479 PRINTS Uridine kinase signature 194 205 - -
Bma14g00666 479 PRINTS Uridine kinase signature 48 65 - -
Bma14g00666 479 TIGRFAM udk: uridine kinase 48 248 IPR000764 -
Bma14g00666 479 Gene3D - 252 467 IPR029057 -
Bma14g00666 479 PANTHER URIDINE KINASE-LIKE PROTEIN 3 17 469 - -
Bma14g00666 479 Gene3D - 44 251 IPR027417 -
Bma14g00666 479 CDD UMPK 50 248 IPR000764 -
Bma14g00666 479 PANTHER URIDINE KINASE 17 469 - -
Bma14g00666 479 CDD PRTases_typeI 325 440 IPR000836 -
Bma14g00666 479 SUPERFAMILY PRTase-like 251 468 IPR029057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00666 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - cit:102611190 840.491
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g00666 Bma-Chr14:7224403 Bma14g01683 Bma-Chr14:35804274 5.63E-14 dispersed
Bma07g00905 Bma-Chr7:32075150 Bma14g00666 Bma-Chr14:7224403 9.09E-16 transposed
Bma14g00073 Bma-Chr14:884893 Bma14g00666 Bma-Chr14:7224403 9.15E-15 transposed
Bma14g00666 Bma-Chr14:7224403 Bma07g01237 Bma-Chr7:47289245 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma12g00164 . 30 180 PRT Gene Family AT1G80050 74.8 1.5e-62 235.7
Bma05g00056 . 3 152 PRT Gene Family AT1G80050 70.0 1.2e-56 216.1
Bma05g00068 . 36 212 PRT Gene Family AT1G80050 58.8 1.2e-51 199.5
Bma01g01273 . 33 158 PRT Gene Family AT1G80050 57.7 1.6e-43 172.6
Bma05g00772 . 30 147 PRT Gene Family AT1G80050 59.6 3.0e-42 168.3
Bma12g00164 . 8 145 PRT Gene Family AT5G11160 74.6 2.7e-54 208.4
Bma05g00772 . 8 132 PRT Gene Family AT5G11160 72.8 2.2e-48 188.7
Bma05g00068 . 14 178 PRT Gene Family AT5G11160 59.4 6.5e-48 187.2
Bma05g00056 . 1 118 PRT Gene Family AT5G11160 74.6 6.0e-46 180.6
Bma01g01273 . 1 118 PRT Gene Family AT5G11160 63.5 1.8e-42 169.1
Bma12g00164 . 7 180 PRT Gene Family AT1G27450 75.9 5.7e-74 273.9
Bma05g00068 . 13 215 PRT Gene Family AT1G27450 70.4 1.7e-73 272.3
Bma05g00056 . 1 155 PRT Gene Family AT1G27450 82.6 5.6e-69 257.3
Bma05g00772 . 7 132 PRT Gene Family AT1G27450 77.0 1.1e-53 206.5
Bma01g01273 . 11 153 PRT Gene Family AT1G27450 54.9 7.8e-47 183.7
Bma05g00406 . 89 575 PRT Gene Family AT2G16570 84.9 4.7e-244 840.5
Bma05g00409 . 1 306 PRT Gene Family AT2G16570 83.5 5.6e-144 508.1
Bma05g00406 . 91 575 PRT Gene Family AT4G34740 85.6 1.0e-243 839.3
Bma05g00409 . 1 302 PRT Gene Family AT4G34740 82.0 5.0e-145 511.5
Bma05g00406 . 86 548 PRT Gene Family AT4G38880 74.2 1.7e-195 679.1
Bma05g00409 . 1 289 PRT Gene Family AT4G38880 75.9 1.5e-122 436.8
Bma12g00164 . 7 180 PRT Gene Family AT1G27450 75.9 5.7e-74 273.9
Bma05g00068 . 13 215 PRT Gene Family AT1G27450 70.4 1.7e-73 272.3
Bma05g00056 . 1 155 PRT Gene Family AT1G27450 82.6 5.6e-69 257.3
Bma05g00772 . 7 132 PRT Gene Family AT1G27450 77.0 1.1e-53 206.5
Bma01g01273 . 11 153 PRT Gene Family AT1G27450 54.9 7.8e-47 183.7
Bma12g00164 . 30 180 PRT Gene Family AT1G80050 74.8 1.5e-62 235.7
Bma05g00056 . 3 152 PRT Gene Family AT1G80050 70.0 1.2e-56 216.1
Bma05g00068 . 36 212 PRT Gene Family AT1G80050 58.8 1.2e-51 199.5
Bma01g01273 . 33 158 PRT Gene Family AT1G80050 57.7 1.6e-43 172.6
Bma05g00772 . 30 147 PRT Gene Family AT1G80050 59.6 3.0e-42 168.3
Bma12g00164 . 5 97 PRT Gene Family AT4G22570 84.9 1.8e-43 171.8
Bma05g00772 . 5 97 PRT Gene Family AT4G22570 82.8 7.4e-42 166.4
Bma12g00164 . 1 96 PRT Gene Family AT4G12440 83.3 9.8e-41 162.5
Bma05g00772 . 1 96 PRT Gene Family AT4G12440 81.3 1.1e-39 159.1
Bma12g00164 . 8 145 PRT Gene Family AT5G11160 74.6 2.7e-54 208.4
Bma05g00772 . 8 132 PRT Gene Family AT5G11160 72.8 2.2e-48 188.7
Bma05g00068 . 14 178 PRT Gene Family AT5G11160 59.4 6.5e-48 187.2
Bma05g00056 . 1 118 PRT Gene Family AT5G11160 74.6 6.0e-46 180.6
Bma01g01273 . 1 118 PRT Gene Family AT5G11160 63.5 1.8e-42 169.1
Bma01g01441 . 3 188 PRT Gene Family AT1G71750 61.4 2.9e-63 238.4
Bma14g00666 . 16 470 PRT Gene Family AT1G55810 83.3 1.3e-220 762.3
Bma07g01237 . 16 459 PRT Gene Family AT1G55810 82.0 5.9e-213 736.9
Bma14g00666 . 67 475 PRT Gene Family AT3G27440 75.3 4.2e-181 630.9
Bma07g01237 . 67 459 PRT Gene Family AT3G27440 74.6 1.5e-173 605.9
Bma14g00666 . 3 469 PRT Gene Family AT3G27190 73.9 1.8e-204 708.8
Bma07g01237 . 3 459 PRT Gene Family AT3G27190 73.8 4.2e-201 697.6
Bma14g00666 . 1 470 PRT Gene Family AT4G26510 83.3 3.2e-230 794.3
Bma07g01237 . 1 459 PRT Gene Family AT4G26510 82.8 2.9e-223 771.2
Bma14g00666 . 3 472 PRT Gene Family AT5G40870 73.7 8.3e-205 709.9
Bma07g01237 . 3 459 PRT Gene Family AT5G40870 73.1 3.1e-199 691.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00666 Bma_Chr14 FPKM 6.136344 5.854181 11.251544 10.343033 7.710857 10.017211 8.436651 16.737648 15.481734 15.912864