Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00675 ATGGCTGGTACTGTAGTCAATAGGAAAAAATTTGCAAAATTAAAGAAACCACCGGCAAAGAAGAAGCAAAAGCATGATCTTTTCAGTTCAAAAGATCCCAAAGTAGAGGACCCTCCTCATGATCTAGCTGGAGAGGTTAATGGCAACGGAGAATACTCAGATTCTGGAGTGGATTTTTCTTCTGATGAAGATCCCTTAGCTGATGATTTTCTCGGAATGAGTGAGGATGAAGGTAAGTGTTCAGAGTCTGATTCTGGTTCAGATTCAGATGGATTTAATATCGAGCAGTCGTCAAAAGCTATAGATGACCAAAAGGCTAAAGAACTAGAAGAAGCGGGGGCTGAAATGACGCTCAACATTAATCAAGAATCTGATGAGTTTAGATTGCCAAGTCGTCAGGAACTTGAAGAAGAGGAACTTAGGCCCCCTGATCTTGCAAATATTCAAAGGCGGATAAGAGAGATTGCTCGAGTCCTCACAAATTTTAAGGCTTTGAGGCAAAATGGTGTCACGAGGAAGGACTACATCGAGCAAATTAAGAAGGATATGTGTTCATATTATGGTTACAATGATTTTCTAATAGGAGTGTTAGTAGAGATGTTTCCTGTCGCTGAGCTTTTGGAGATCGTGGAAGCTTTTGAGAAGCCAAGACCAATATGTTTAAGAACAAACACTCTAAAGACCCGGCGGCGTGACTTGGCAGATGTGCTGATAAATAGAGGAGTAAACTTGGCGCCTTTGAGCAAGTGGTCTAAAGCAGGGCTGGTAGTGTATGATTCACAAGTGGCAATTGGAGCCACTCCTGAATATATGGCTGGTTTTTATATGCTTCAAAGTGCAAGCTCATTTCTGCCTGTGATGGCCCTTGCTCCAAAAGAGAAGGAACGGATAGTTGATATGGCGGCTGCACCAGGTGGCAAAACAACATATATTGCTGCTCTCATGAAAAACAGTGGAATAATTTTTGCAAATGAGTTTAAAGCTAAGAGGTTAAAGTCACTCACTGCAAATTTACATCGAATGGGGGTTACAAATACCATTGTTTGTAATTATGATGGAAAGGAGCTTCCAAAGGTTTTGGGTATTCACACAGCTGATCGGGTCTTGTTGGATGCCCCATGTAGTGGATCTGGAGTCATCTCTAAAGACGAGTCTGAACTTATACTTGCTGCAATAGATATGGTTGATGCCAATTCAAAAACTGGGGGTTATGTAGTTTATTCGACCTGCTCCATTATGGTGGCTGAGAGTGGAATCCTTGAAAACGGCAAGCCAGAATCCCAACCTTCTTTTAAAAAGAAGGAAAAACGGAAATTCCAGTCAGAGGTGGCAAAGAAAGTTGAGCTTGAAGAAAGTGGAGATAGGAATGGTAGTGAGAATTTTCAACATCATGTTATACAAAAAGGCAGTAAAAGAAGAAAGAAGGAAGTAAAGAACGGAGAAGCTAAAAATGGCAAAGCAGAAGGATCCCAACATCCTTTCAAAAAGAAGGAAAAACGTAAATTCCCATCGAAAGCAGAAATCTCTAAAACCAGGTAA 1539 40.94 MAGTVVNRKKFAKLKKPPAKKKQKHDLFSSKDPKVEDPPHDLAGEVNGNGEYSDSGVDFSSDEDPLADDFLGMSEDEGKCSESDSGSDSDGFNIEQSSKAIDDQKAKELEEAGAEMTLNINQESDEFRLPSRQELEEEELRPPDLANIQRRIREIARVLTNFKALRQNGVTRKDYIEQIKKDMCSYYGYNDFLIGVLVEMFPVAELLEIVEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLAPLSKWSKAGLVVYDSQVAIGATPEYMAGFYMLQSASSFLPVMALAPKEKERIVDMAAAPGGKTTYIAALMKNSGIIFANEFKAKRLKSLTANLHRMGVTNTIVCNYDGKELPKVLGIHTADRVLLDAPCSGSGVISKDESELILAAIDMVDANSKTGGYVVYSTCSIMVAESGILENGKPESQPSFKKKEKRKFQSEVAKKVELEESGDRNGSENFQHHVIQKGSKRRKKEVKNGEAKNGKAEGSQHPFKKKEKRKFPSKAEISKTR 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 7308734 7313305 + Bma011126.1 Bma14g00675 94656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00675 512 MobiDBLite consensus disorder prediction 23 41 - -
Bma14g00675 512 MobiDBLite consensus disorder prediction 474 512 - -
Bma14g00675 512 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 228 241 IPR023273 GO:0008168
Bma14g00675 512 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 205 217 IPR023273 GO:0008168
Bma14g00675 512 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 172 192 IPR023273 GO:0008168
Bma14g00675 512 TIGRFAM nop2p: NOL1/NOP2/sun family putative RNA methylase 221 417 IPR011023 GO:0003723|GO:0006396|GO:0008757
Bma14g00675 512 Coils Coil 106 126 - -
Bma14g00675 512 MobiDBLite consensus disorder prediction 1 106 - -
Bma14g00675 512 MobiDBLite consensus disorder prediction 85 99 - -
Bma14g00675 512 MobiDBLite consensus disorder prediction 57 71 - -
Bma14g00675 512 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 13 417 IPR023267 GO:0001510
Bma14g00675 512 MobiDBLite consensus disorder prediction 446 512 - -
Bma14g00675 512 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 181 416 IPR029063 -
Bma14g00675 512 MobiDBLite consensus disorder prediction 119 140 - -
Bma14g00675 512 Gene3D Sun protein; domain 3 175 280 - -
Bma14g00675 512 PRINTS RNA (C5-cytosine) methyltransferase signature 366 378 IPR023267 GO:0001510
Bma14g00675 512 PRINTS RNA (C5-cytosine) methyltransferase signature 298 308 IPR023267 GO:0001510
Bma14g00675 512 PRINTS RNA (C5-cytosine) methyltransferase signature 269 283 IPR023267 GO:0001510
Bma14g00675 512 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 205 282 IPR031341 -
Bma14g00675 512 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 209 501 IPR001678 GO:0008168
Bma14g00675 512 Pfam 16S rRNA methyltransferase RsmB/F 286 384 IPR001678 GO:0008168
Bma14g00675 512 PANTHER BNACNNG49010D PROTEIN 13 417 - -
Bma14g00675 512 Gene3D Vaccinia Virus protein VP39 281 451 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00675 K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase [EC:2.1.1.310] - gmx:100789776 578.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g00675 Bma-Chr14:7308734 Bma14g00679 Bma-Chr14:7339793 4.52E-19 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g697 . . . . . . . . . . Cma01g01067 Cma09g01020 Car01g00941 Car09g00924 . Cpe06g00828 Cpe02g00831 . . . . . . . . . . . . . . . . . . Lsi02g01817 . . . . . . . . . . Bma14g00675 . Cmo01g01109 Cmo09g01023 . . . . . . . . . . . . . . . . . . . . . . . Cme01g00884
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004303 1 1 2 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 3 4 0 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00675 Bma_Chr14 FPKM 4.762963 4.323336 4.450774 5.284008 6.815212 6.012645 7.635998 9.726525 9.95681 9.431493