Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00679 ATGTTGCAGGTGCTCCCTCTCCGTGCCAACTTCCAACCACAACCACACAAACTCAAAGCATCTCCTGCATTTTCTTCATCTTCTTCCAGTCCACTGAGCTTCACGAAGAAGACCCAAAAGCCTAATACTTTCGTTTCTTCTCCCCGAAAAGGTTCTCACAGTCCTCGGCAGAAGACCCAAAAGCTAAATTTGGACGTTTCTCCCCATAGAGCTGTGTCGGCGGTAAGATTGATGAGAATAGAGCTTGGTGGCGCATTTGCTGACCTTCTTAATGAGAAAGGGAAAGGCTCTGGTGATAATGAGATGAGATACGTTGAGCGAACTCTTGGCTTTCGCACGCGTGATTTAGAAGATCGTGATCTTAGATTGGTAACTGATATTGTTGGCGGAACGATTCGTTGGAGGAGATATTTGGACCATTTGATTACTTCTCTATGCCATGATGAGAATAGTTTTAAGGGCATGGAACCTCTTCTCATTCAGATCCTCCGAATCGGTTTCTATGAGATTCTCAAGCTAGATATGCCCCCATATGCTGTTGTAGATGAGAATGTAAAGCTTGCTAAGGTAGCCCTTAGACCTGGTGCTGGAAACTTGGTCAATGGAATCCTTCGAAAGCTTCTTTTGCTGAAGGAAAAAAACTCTCTTCCTCTACCTAAAGTGGAAGGTGATGATCGAGCAAAAGCAAGAGCTCTTGCAACTTTGCATTCCCATCCTGTTTGGATGGTTAGGCGATGGACAAAGTATCATGGGCAAGAAGAAGCTATTAGATTGATGGAGTGGAATAACAGTGAACCGAGTTATAGCTTGAGGGCAAACAGTGGGAATGGTGTTTCAAGAGCTGATCTTATTACAAGACTCAGTTTGTTAAAGGTCCCTCATGAGATTTCTTTGCATTTGGATGATTTTGTTCGAATCAAAACTGGATTGCAGGTAATCATACAAGCTGGGTTATTTAAAGAAGGGTTGTGTTCAGTGCAAGATGAGAGTGCTGGTCTTGTAGTTTCTGTCTTAAATCCTCAGCCTGGTGAGAGCATTATTGATTGTTGTGCTGCTCCAGGAGGAAAAACACTCTGTATAGCTTCCCAATTAAAAGGCCAAGGTACAATATATGCTATTGACATCAATAAAGGTCGTTTACGAATCCTTAAAGAGACAGCAGAGATACACAAATTAGATGGGATTATCACTACCATTCACAGTGATCTTCGACAATTTTCTGAAAAACATCCTGTGAAGTGTGATAAAGTTCTGTTGGATGCTCCTTGCTCTGGATTAGGGGTTCTATCCAAGAGAGCTGACCTGCGTTGGAATAGGAAACTAGAGGACATGGAGGAGCTTAAGAATTTACAGGATGAACTTCTTGATGCAGCTTCCATATTAGTAAAGGAGGGTGGAGTTTTGGTCTATAGTACCTGCTCAATAGATCCTGAAGAAAATGAAGGGAGGGTTGCTGCATTTCTTTCAAGGCACCTAGAATTTTCGGTAGATCGTGTTGACAAATACGTACCACATCAATTCACGACAAAGGATGGTTTCTATTCCTCTAATCCGATAAAACATTCACTTGACGGCTCCTTCGCTGCTCGTCTTGTTCGAGGATCGTGA 1608 42.66 MLQVLPLRANFQPQPHKLKASPAFSSSSSSPLSFTKKTQKPNTFVSSPRKGSHSPRQKTQKLNLDVSPHRAVSAVRLMRIELGGAFADLLNEKGKGSGDNEMRYVERTLGFRTRDLEDRDLRLVTDIVGGTIRWRRYLDHLITSLCHDENSFKGMEPLLIQILRIGFYEILKLDMPPYAVVDENVKLAKVALRPGAGNLVNGILRKLLLLKEKNSLPLPKVEGDDRAKARALATLHSHPVWMVRRWTKYHGQEEAIRLMEWNNSEPSYSLRANSGNGVSRADLITRLSLLKVPHEISLHLDDFVRIKTGLQVIIQAGLFKEGLCSVQDESAGLVVSVLNPQPGESIIDCCAAPGGKTLCIASQLKGQGTIYAIDINKGRLRILKETAEIHKLDGIITTIHSDLRQFSEKHPVKCDKVLLDAPCSGLGVLSKRADLRWNRKLEDMEELKNLQDELLDAASILVKEGGVLVYSTCSIDPEENEGRVAAFLSRHLEFSVDRVDKYVPHQFTTKDGFYSSNPIKHSLDGSFAARLVRGS 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 7339793 7344634 + Bma011130.2 Bma14g00679 94660

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00679 535 Gene3D Sun protein; domain 3 225 331 - -
Bma14g00679 535 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 33 534 IPR023267 GO:0001510
Bma14g00679 535 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 230 533 IPR029063 -
Bma14g00679 535 Pfam 16S rRNA methyltransferase RsmB/F 336 531 IPR001678 GO:0008168
Bma14g00679 535 Pfam NusB family 98 207 IPR006027 GO:0003723|GO:0006355
Bma14g00679 535 MobiDBLite consensus disorder prediction 1 65 - -
Bma14g00679 535 PRINTS Viridiplantae FMU-related RCMT signature 99 115 IPR023268 -
Bma14g00679 535 PRINTS Viridiplantae FMU-related RCMT signature 492 504 IPR023268 -
Bma14g00679 535 PRINTS Viridiplantae FMU-related RCMT signature 215 228 IPR023268 -
Bma14g00679 535 PRINTS Viridiplantae FMU-related RCMT signature 75 98 IPR023268 -
Bma14g00679 535 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 258 534 IPR001678 GO:0008168
Bma14g00679 535 TIGRFAM rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 112 532 IPR004573 GO:0006364|GO:0008649
Bma14g00679 535 CDD AdoMet_MTases 346 471 - -
Bma14g00679 535 PRINTS RNA (C5-cytosine) methyltransferase signature 318 332 IPR023267 GO:0001510
Bma14g00679 535 PRINTS RNA (C5-cytosine) methyltransferase signature 516 533 IPR023267 GO:0001510
Bma14g00679 535 PRINTS RNA (C5-cytosine) methyltransferase signature 465 481 IPR023267 GO:0001510
Bma14g00679 535 PRINTS RNA (C5-cytosine) methyltransferase signature 415 427 IPR023267 GO:0001510
Bma14g00679 535 PRINTS RNA (C5-cytosine) methyltransferase signature 347 357 IPR023267 GO:0001510
Bma14g00679 535 MobiDBLite consensus disorder prediction 19 65 - -
Bma14g00679 535 Gene3D - 92 219 IPR035926 -
Bma14g00679 535 Coils Coil 444 464 - -
Bma14g00679 535 Gene3D Vaccinia Virus protein VP39 332 535 IPR029063 -
Bma14g00679 535 PANTHER NOL1/NOP2/SUN FAMILY PROTEIN / ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEIN 33 534 - -
Bma14g00679 535 SUPERFAMILY NusB-like 104 242 IPR035926 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00679 K03500 rsmB, sun; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] - jre:108994543 809.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02203 Bma-Chr1:78938912 Bma14g00679 Bma-Chr14:7339793 2.29E-18 dispersed
Bma03g01217 Bma-Chr3:19003832 Bma14g00679 Bma-Chr14:7339793 1.52E-10 dispersed
Bma14g00179 Bma-Chr14:2343098 Bma14g00679 Bma-Chr14:7339793 7.90E-09 dispersed
Bma14g00675 Bma-Chr14:7308734 Bma14g00679 Bma-Chr14:7339793 4.52E-19 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g678 Blo03g00505 . Bda07g00413 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0007 . . . . Csa07g00858 . . . . . . Bpe11g00590 . . Bma14g00679 . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01039 Cme01g01121
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016633 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 6
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00679 Bma_Chr14 FPKM 6.696301 5.952422 1.628678 2.401134 1.158667 1.287361 1.353797 0.0 0.0 0.0