Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00698 GAAATGTATGGAAGAAAGGCATTTCAGCTGCTGAAGGAGCTTTCAACTAGCGAGAAGGGGCAGTTGAAGCTCTTCAATAGTGATCTTTTTGACCAAGTGATTGCAGAATGTAATCAACATCACCTCGAGCTTCAGTTCTTGATAAGGAAAATGCAAGAAGAAGGAATGGATCTTCAGACAACTAAAAACGCAGACCACTTTGGGGCACTCATTCACCACCTTGCTTTAGTCCGGAATAAACGCTGTTTGATGGCATATGCCTACAATCGAGCTGAATTCACTCGGAGTTTGATGTGGAAGGTAGGAACCGTGCTTCCACAAGAAATTGAAGTAAAGCTCAGCCACTCGGAGGAGGAGTATTTTAAGAAACACTCTGCAGCTCTGAAATCATTTATGTCAAAACTGGAACTTGATTTAACTGTGGATATGATGCCACCCAAAGATCCTTATATCCAGGTTAGAGTTCTCGATGATATTGGAGAAGGAATTGTCCTCAGTGATGATAAGACAGCAAATTTTGCTCGACATTCAATGCACTTTCTTAAACGAACCGATGCTGAGCAGTTCATTTCTCGAGTAAGATAG 585 41.71 EMYGRKAFQLLKELSTSEKGQLKLFNSDLFDQVIAECNQHHLELQFLIRKMQEEGMDLQTTKNADHFGALIHHLALVRNKRCLMAYAYNRAEFTRSLMWKVGTVLPQEIEVKLSHSEEEYFKKHSAALKSFMSKLELDLTVDMMPPKDPYIQVRVLDDIGEGIVLSDDKTANFARHSMHFLKRTDAEQFISRVR 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 7592368 7594697 + Bma011150.1 Bma14g00698 94679

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00698 194 SUPERFAMILY GINS helical bundle-like 2 147 IPR036224 -
Bma14g00698 194 Pfam GINS complex protein 49 117 IPR021151 -
Bma14g00698 194 CDD GINS_A_psf1 4 137 IPR005339 GO:0000811|GO:0006260
Bma14g00698 194 Gene3D - 2 135 - -
Bma14g00698 194 PANTHER PARTNER OF SLD5 2 193 IPR005339 GO:0000811|GO:0006260
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00698 K10732 GINS1, PSF1; GINS complex subunit 1 - csv:101205409 321.242
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00026 Bma-Chr8:424444 Bma14g00698 Bma-Chr14:7592368 2.96E-144 dispersed
Bma13g00787 Bma-Chr13:28434463 Bma14g00698 Bma-Chr14:7592368 1.25E-143 dispersed
Bma14g00519 Bma-Chr14:5764907 Bma14g00698 Bma-Chr14:7592368 2.45E-144 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma14g00768 . 145 883 Core DNA Replication Machinery Family AT4G14700 65.9 6.9e-281 963.4
Bma14g00768 . 80 883 Core DNA Replication Machinery Family AT4G12620 63.2 4.5e-288 987.3
Bma05g00078 . 7 368 Core DNA Replication Machinery Family AT2G37560 64.9 1.4e-134 476.1
Bma05g00061 . 7 360 Core DNA Replication Machinery Family AT2G37560 65.8 1.8e-132 469.2
Bma11g00406 . 7 279 Core DNA Replication Machinery Family AT2G37560 54.3 4.1e-97 351.7
Bma01g00448 . 1 415 Core DNA Replication Machinery Family AT2G01120 61.1 1.2e-138 490.0
Bma01g00093 . 1 319 Core DNA Replication Machinery Family AT1G26840 59.9 1.0e-93 340.1
Bma12g00588 . 1 799 Core DNA Replication Machinery Family AT1G79150 55.6 8.0e-232 800.4
Bma07g01373 . 1 940 Core DNA Replication Machinery Family AT1G44900 76.2 0.0e+00 1368.6
Bma03g00566 BCT 4 728 Core DNA Replication Machinery Family AT2G16440 73.9 5.4e-313 1070.1
Bma01g00291 . 936 1699 Core DNA Replication Machinery Family AT2G07690 74.1 0.0e+00 1086.6
Bma07g00859 . 1 836 Core DNA Replication Machinery Family AT5G44635 70.2 0.0e+00 1139.4
Bma15g00493 CCT 18 722 Core DNA Replication Machinery Family AT4G02060 84.0 0.0e+00 1188.7
Bma11g00084 . 40 509 Core DNA Replication Machinery Family AT2G29680 57.2 5.2e-149 524.6
Bma11g00084 . 1 479 Core DNA Replication Machinery Family AT1G07270 54.6 6.1e-136 481.1
Bma12g00066 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.1 8.2e-255 876.3
Bma09g00801 . 3 596 Core DNA Replication Machinery Family AT3G25100 76.8 7.7e-253 869.8
Bma15g00665 . 1 594 Core DNA Replication Machinery Family AT3G25100 76.6 2.2e-252 868.2
Bma04g01647 . 22 728 Core DNA Replication Machinery Family AT3G09660 60.8 6.2e-250 860.5
Bma10g01097 CCT 1 610 Core DNA Replication Machinery Family AT2G14050 76.2 1.2e-270 929.1
Bma03g01547 . 1 246 Core DNA Replication Machinery Family AT2G14050 74.9 3.2e-95 346.3
Bma03g01549 . 9 260 Core DNA Replication Machinery Family AT2G14050 56.9 7.4e-76 282.0
Bma05g00365 . 6 353 Core DNA Replication Machinery Family AT2G20980 54.6 5.2e-104 374.8
Bma15g00229 . 1 228 Core DNA Replication Machinery Family AT1G77320 71.9 2.9e-95 347.1
Bma13g00787 . 1 191 Core DNA Replication Machinery Family AT1G80190 69.1 7.5e-75 276.9
Bma14g00519 . 2 192 Core DNA Replication Machinery Family AT1G80190 69.1 1.7e-74 275.8
Bma14g00698 . 2 192 Core DNA Replication Machinery Family AT1G80190 68.0 1.1e-73 273.1
Bma08g00026 . 1 191 Core DNA Replication Machinery Family AT1G80190 67.5 3.1e-73 271.6
Bma05g00599 . 1 145 Core DNA Replication Machinery Family AT3G12530 71.0 4.3e-59 224.2
Bma07g00894 . 1 145 Core DNA Replication Machinery Family AT3G12530 71.0 4.3e-59 224.2
Bma08g01083 . 1 182 Core DNA Replication Machinery Family AT1G19080 65.9 6.2e-68 253.8
Bma08g01083 . 1 182 Core DNA Replication Machinery Family AT3G55490 65.9 6.2e-68 253.8
Bma02g00932 . 15 163 Core DNA Replication Machinery Family AT5G49010 64.0 1.5e-48 189.5
Bma15g00244 . 2 617 Core DNA Replication Machinery Family AT1G67630 60.1 2.4e-217 751.9
Bma05g01138 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.7 7.1e-188 653.7
Bma05g00872 . 1 453 Core DNA Replication Machinery Family AT5G41880 65.3 7.8e-181 630.2
Bma09g00431 . 27 1152 Core DNA Replication Machinery Family AT5G63960 74.7 0.0e+00 1696.8
Bma10g00174 . 4 437 Core DNA Replication Machinery Family AT2G42120 76.0 1.4e-198 689.1
Bma05g01138 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.7 7.1e-188 653.7
Bma11g00219 . 2 1474 Core DNA Replication Machinery Family AT1G08260 76.5 0.0e+00 2272.7
Bma11g00219 . 23 1474 Core DNA Replication Machinery Family AT2G27120 74.1 0.0e+00 2150.6
Bma12g01277 . 7 486 Core DNA Replication Machinery Family AT5G22110 70.3 1.6e-195 679.1
Bma03g00647 . 22 198 Core DNA Replication Machinery Family AT5G22110 56.8 1.2e-54 211.1
Bma07g00220 . 7 911 Core DNA Replication Machinery Family AT5G22010 63.0 1.1e-287 986.1
Bma05g00808 . 3 332 Core DNA Replication Machinery Family AT1G63160 89.7 4.6e-170 594.0
Bma01g02668 BCT 1 354 Core DNA Replication Machinery Family AT5G27740 85.0 1.4e-177 619.0
Bma01g01795 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.0 2.4e-177 618.2
Bma04g00016 BCT 1 336 Core DNA Replication Machinery Family AT1G21690 81.3 1.5e-152 535.8
Bma02g00213 BCT 1 339 Core DNA Replication Machinery Family AT1G77470 71.4 6.2e-144 507.3
Bma01g00807 BCT 1 283 Core DNA Replication Machinery Family AT1G77470 57.4 1.3e-93 340.1
Bma06g00893 . 1 450 Core DNA Replication Machinery Family AT2G06510 77.2 3.3e-214 741.5
Bma12g00253 . 2 454 Core DNA Replication Machinery Family AT2G06510 65.5 1.9e-185 646.0
Bma12g00964 CCT 1 625 Core DNA Replication Machinery Family AT5G08020 66.9 2.1e-242 835.1
Bma08g00242 CCT 1 591 Core DNA Replication Machinery Family AT5G08020 62.5 1.0e-220 763.1
Bma12g00253 . 1 558 Core DNA Replication Machinery Family AT5G45400 62.8 2.4e-207 719.2
Bma06g00893 . 3 453 Core DNA Replication Machinery Family AT5G45400 63.0 6.8e-170 594.7
Bma12g00964 CCT 1 624 Core DNA Replication Machinery Family AT5G61000 64.8 6.2e-237 817.0
Bma08g00242 CCT 1 585 Core DNA Replication Machinery Family AT5G61000 61.7 9.4e-217 750.0
Bma12g00253 . 2 579 Core DNA Replication Machinery Family AT4G19130 60.7 7.9e-205 710.7
Bma06g00893 . 3 453 Core DNA Replication Machinery Family AT4G19130 60.3 2.3e-164 576.2
Bma01g00646 . 1 361 Core DNA Replication Machinery Family AT5G26680 83.9 7.4e-178 620.2
Bma02g01168 . 1 1131 Core DNA Replication Machinery Family AT1G08840 50.7 1.5e-288 989.2
Bma08g00918 . 1 295 Core DNA Replication Machinery Family AT2G25100 68.2 1.6e-115 412.5
Bma08g00503 . 1 239 Core DNA Replication Machinery Family AT2G25100 72.4 1.0e-98 356.7
Bma07g00168 . 46 802 Core DNA Replication Machinery Family AT1G08130 67.6 1.4e-286 982.2
Bma07g00168 . 209 802 Core DNA Replication Machinery Family AT1G49250 66.8 7.0e-231 797.0
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00698 Bma_Chr14 FPKM 7.163408 6.902164 6.656038 6.416873 10.69547 10.412498 11.591957 7.53401 5.464453 6.286073