Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00740 ATGATCGAGTTGGATGAAAGTGTAGAAGGAGAGTACGTCGAAGCCAACGACTTATACTTCAAAAGGATTGGAGAACCTGTTCCCATTAAACCTTGCGATTCAGTTTTTGATTTGGAAACCCTTCCAGCTCAGCCTCTCGCAGTCTCCGAACGATTTCACGTCGTCTGCGTTGCCCATACAACTGGGTTTTGTGTCGCGAGGACTAAGGATGTCGTGGCTTCAGCGAAAGAGATTAAGGACAAGGGAAATGGTTCTTCTATATTGGATTTGAGTATCGTTGATGTTCCAGTGGGCAAGGTTCATATTTTGGCTTTCTCCTCTGACAACTCAATACTTGCTGCATCTGTTTCTGGAGATACTCATTTTTTTTCAACTTCTTCACTCATCAATAAGGAGCGGGAGCCGTCATTCTCCTGTACTCTTAATGATGGGAGCTCCGTCAAAGATCTCAAATGGACCCCAAAATCAGAAAATTCATATCTTGTTCTTTCAAACGATCAGAAGCTCTATCATGGAATGCTTGATGGCCCACTTAAAGATTTGATGAATGATGTTGATGCTGTCGAATGGAGTACCAAGGGAAATTCTATCGCTGTTGCGCGAAACAGGATTATCAGCATTTTATCATCCAGATTCAAAGAAAGGTTTTCCATGTCACTATTGAATGAGTCACAGATTGGAGTTTCCAACCGGATTGACTCAATGAAGTGGGTGCGTGCTGATTGCATAATTCTAGGATGCTTTAAAGTAACTGAAGCAGGAGCCGAAGAAGATTATCTCATCCAAATAATCAGAAGTAAAGATGGGAAACTCACTGATGCTTCGTCAGAAAGAGTTGTGTTGTCATTCAGGGACGTTTTTCTTGGTTTAATTGATGACATTGTGCCCATCGGAACTGGACCTTATTTATTCTTGAGCTACGTGGAAAAAGGTGCACTTGCAATTATGGCTAATAGAAAGAATACAGATCAGCATGTTGTTTTACTTGGTTGGTCACTTGGGGCTGAAAAGGGTGAGGCTGCTGTTATAGAAATTGAAAGAGATACATTGCTACCAAGGATTGAGCTTCAAGAAAATGGTGATGATAATTTGATCTTGGGGCTATGCACGGATAAAGTTTCCATCTCTGAAAAAATTGAAGTGCAACTTGGTGCTGGTGAACTAACAGAACTCTCACCATTTTGCGTTCTTATGTGTCTCACTCTAGAGGGAAAGCTTAACATGTTTCATGTTGCCAGTGTCAAAGAATATGTAACATCTCCTGAGATTATGTCCGCTCTACCTGACGAGGAGGAATGTATACCAGAGCAACCCATCCAGTCTTCAGAACCCGGAAAACTGGAATTAGCAGAAAATAGAGTGCGTAATAAGTTGCTGGAGTCAGACGATATGACGATTAGCAAGACAATTGACCTGAAACATTCTGGTACAGATGAGAGTACAATTTTTCTGTCTGCTGCAAATAAAACCTCCAATGTAGAAAGTCATACTAAATTTTTATCCATAGATTCCTTTTCACAACCCTCAAAGTTTTCTTTCCCAAAAAAATCTATTCAAAGCTCAAATGACTTCAGTAAGTCTGTTCAGAAATCTGCAGTGTTTAGATCTAACTCCGTGTCAACAGAGGGAGAAATGTTGGCTGATGACTCCAATCAATCACGCCATGAGAATCAACAAAATAGTGTTCAAGAAATTGGAGGAATAACAAACATGGGGACAACTGGCTTTCAGAGTGGTTCTGAGTTGTATGGCGGAATGTTTACATTTTCCAAGGAAGTCAAATCAGGATCTTCCCCTTTATCATCCAAACTTTCACAAAGCAGCATGTTTGAGAATCCTGATCAGAATTTTGGCACCAATAAAGTGTCAGAACTTTTTCCTGGGAAGACTTCTCTTTCAAATAATGCTACTAGTTCGACAGTCATCCCTTCTGGTATGCCATATCAGGGTAAAGGATCACTAACATCTCCAGCTTTATCAACTCAGACTCAGGGAATGCCAATATCATCAGGGGTTACTAAAATTGAATCACTTCCGACGGTGCATGGTGCACAAATTCAATCGCAAATGAACTTCCCATTAGAGAAGTGTGAGCAAACTCACATGCCTCATCCTCTCAAGGAAAGTTTCAGAACTGCACCTCTATCAAGATTAATAAGTTCTGAGCAAAACTTGTTGAAAATTAAACAGATGACCAAAGAATTAGACATGCTTCTGGAATCTATTGAAAAACCAGGTGGTTTTGTAGATGCCTGCACTGTGTTTCAGAAACATTTTGTTGAAGCATTGGAAAAGGGTGTTGATGCTCTTTCTGTGAAATGCCAAATGTGGAATTGTACAATAGATCAACGCCTTCAAGAAATCCAAAATCTTCTTGATAGTACATTACAAGTTTTGGCAAAAAAAATTTACATGAAAGGCATAGTAAAACAAGCTTCTGATAGTCGGTATTGGGAACTCTGGGATCGTCAAAAGTTAAGTTGTGAACTAGAGATGAAACAACAACATATAGTAAAGATGGATAAGGATATGACCAATCAGTTAATTGAGTTAGAAAAGCATTTCAATGGCCTAGAACTTAATACTTTTGGTGAAAATAGTGGAGCTCGTGATAAAAGATCTTTCCAGAGTAAATGTGGATTTTCAAGGTTGACATACTTTATTTCAGTTGAATACTACAATATCTTCTTTGAGGATAAAGTTTACTGTTGCAGCCATGGTCGCTCCTTGCATACTTTACACAACACAATGAGATCTCAGTTAGCAGCTGCGGAGTTTCTTTCAGAATCTCTCTCAAAACAAATGACAGCACTAAGTATACAAGCACCTTCTGCAGATAAGAGAAACGTGAAAAAAGAGTTATTTGAAACAATAGGGATACCTTATGATGCTTCATTCAGCTCTCCAGATTTGAAAAGAGTTTCTCATATTACACCTAATAATAGGCTCTCACTTTTATCTGATTTTTCTTCTAGCAGTAGTGAGTTTAGGAGATCCAATCCGAGAAAAGATCATAAAACTGAAACTGCAAGGAGGAGAAGAGATTCACTTGATCCAAATTTGGTTAGTTTCGAACCTACAAAAACCACTGTTCAAAGGAGGAGTTTGCAAGAAAATCAAAGGGCAAGTGGTCGGCGATCATTCTTAAATAAGAAACTTTCTAGCCCTCTCAATATCGAGAAAGTAGTTGCTCCCCTGGCAGATTCTATAAAACCTTCAGTTTTAATGCCATTCCAGAGACAGAGTTCTGAGAAATCTGCGACAATTCTTTCATATGGCGGCAATCTTGCACAACCATCTCTCCCAGCGGAGAGGGAATCACAAATATTGGAGAGAAACAAGATTGGACCTTTTTCTTTGCCACATGGATCTCAGTATCCGAATTCAACACAAAAGAACAGCTTGAGTCAAGCTTATGACGCCAATGGGGAGAAATCAAGGCCAGGCCAGTCTTTATTTGAGAAGACTTCATCTATTGATATTGTTTCACAAACTGGCGCCAAATCTTTTCGAGAATCAGAAACGAACCTCGACAAGAAACCATCAATATTTTCAATGTCACCCTCACAGGCAACGCCATTGTTGAGAAATCCTGAAATGTCAAATGTGGACAGGAAGGAGTTAGTTTTTCCTGGTTTATCAAGTGGAAATGTCAATATTTTTTCTGCGTCAAAGGGCTCGCTTGTTGAGTCGGCAAAAGAGCTTGAATCTCACAAAACTGCTGCATCTGTAACAGGTTCTGTTCTTCCTGAAAAACTTCCCCAGATTGATTTGAGGAGAGACAAGAGACAGTCCGATGATAATGTGTTTTCTTCAACTTTTTCTTTGTCACGGTCATCACCATTTTCAATGGTTAATTCAACGTCTTCTCCATCTTCTATGACAAGTTCTGCTCCATCAAGTAATTCTACATTTGCAGGCTCTGATAGAAAAGCATCGACCACTGAATTATCAGGCTTTTCCCCTCCAATTGTTTCTGCTTCGGGTTCTTTTGCTTTCCAAACAACTAAACCATTGGTGTTCCCACCAACTCCTGCGCAACAATCAAGTCCAGCATCAGATTCTACCAAAACAGAGCCTCAACTTAGTTCAACAGTTGATTCGGAAATTACCAAACAAGAACCAACTTTAGAGACTAAATCTCCAATAGGCATAGTCAGTCTAAAGCCTGTTCCTTCAGGATTATCTGGTGCTGAAAGCTCATCAATACAGAAATCTGATAGCCTTCTCAGTTCTCAGGAGCTGACAACTTCCATACCAAATGTTACGTCAAATTCTCAACCACAGCAACCTTCTGGTATTTTTTCACAAATACGGAACACAACATCTGAGACTGTTGCTGCAGAGAAACAGTTAGAAATTCCTATTGCTCAGGATGACAGTATGGATGAGGAGGCTCCTGAGTCAATCAGTACAGGTGAACTTAATTTGGGTAGTCTTGGTGGATTTGGAATTAGTTCGACTACAATCCCAACTGCCCCTAAAGCAAACCCATTTGGTGGTTCTTTTGGAAATGCTGCAATACCAACAATGAGTTCTCCGTTTTCCATGACAGTTCCTAGTGGAGAATTGTTACGCCCTGCGTCTTTTAACTTTCAATCTCCATTCTCTTCCCAGTCCTCTCAGTCAACAAGTTCCACTGCCTTCTCTGGTGGCTTTGGCAGTGGAGTGGCTGGTCAATCTGCCAATCAAGGTGGGTTTGGCCAGCCATCCCAGATTGGATCTGGACTGCAAGCACTGGGATCGGTTTTAGGTACTTTTGGACAGTCACGGCAGCTTGGTCCAACTCCTCAAGGAACCAATTCAGGTTCTTCCAGTGGATTTGGTGGCGGTTTTGCTGGGATGAAACCTATGGGTGGCTTTTCAAATGGTTTGGCATCAGGTGGTGGATTTGGTGGTTTGGCATCAGGTGGTGGTGGATTTGGTGCTTTGGCATCAGGTGGTGGGTTTTCAGGAGTAGGTGCTGGCGGTGGATTTCAGGCAGCAGGTGGCGGGTTTGGAGCTTTCAGCAACACCACTCAGGGCACAGGCGGTTTCTCTGCTTTTGGTAGCGGTGCAGGAGGAAGTGGCGTTCCTCCGGAGCTCTTCACACAGATTAGAAAGTAG 5106 41.17 MIELDESVEGEYVEANDLYFKRIGEPVPIKPCDSVFDLETLPAQPLAVSERFHVVCVAHTTGFCVARTKDVVASAKEIKDKGNGSSILDLSIVDVPVGKVHILAFSSDNSILAASVSGDTHFFSTSSLINKEREPSFSCTLNDGSSVKDLKWTPKSENSYLVLSNDQKLYHGMLDGPLKDLMNDVDAVEWSTKGNSIAVARNRIISILSSRFKERFSMSLLNESQIGVSNRIDSMKWVRADCIILGCFKVTEAGAEEDYLIQIIRSKDGKLTDASSERVVLSFRDVFLGLIDDIVPIGTGPYLFLSYVEKGALAIMANRKNTDQHVVLLGWSLGAEKGEAAVIEIERDTLLPRIELQENGDDNLILGLCTDKVSISEKIEVQLGAGELTELSPFCVLMCLTLEGKLNMFHVASVKEYVTSPEIMSALPDEEECIPEQPIQSSEPGKLELAENRVRNKLLESDDMTISKTIDLKHSGTDESTIFLSAANKTSNVESHTKFLSIDSFSQPSKFSFPKKSIQSSNDFSKSVQKSAVFRSNSVSTEGEMLADDSNQSRHENQQNSVQEIGGITNMGTTGFQSGSELYGGMFTFSKEVKSGSSPLSSKLSQSSMFENPDQNFGTNKVSELFPGKTSLSNNATSSTVIPSGMPYQGKGSLTSPALSTQTQGMPISSGVTKIESLPTVHGAQIQSQMNFPLEKCEQTHMPHPLKESFRTAPLSRLISSEQNLLKIKQMTKELDMLLESIEKPGGFVDACTVFQKHFVEALEKGVDALSVKCQMWNCTIDQRLQEIQNLLDSTLQVLAKKIYMKGIVKQASDSRYWELWDRQKLSCELEMKQQHIVKMDKDMTNQLIELEKHFNGLELNTFGENSGARDKRSFQSKCGFSRLTYFISVEYYNIFFEDKVYCCSHGRSLHTLHNTMRSQLAAAEFLSESLSKQMTALSIQAPSADKRNVKKELFETIGIPYDASFSSPDLKRVSHITPNNRLSLLSDFSSSSSEFRRSNPRKDHKTETARRRRDSLDPNLVSFEPTKTTVQRRSLQENQRASGRRSFLNKKLSSPLNIEKVVAPLADSIKPSVLMPFQRQSSEKSATILSYGGNLAQPSLPAERESQILERNKIGPFSLPHGSQYPNSTQKNSLSQAYDANGEKSRPGQSLFEKTSSIDIVSQTGAKSFRESETNLDKKPSIFSMSPSQATPLLRNPEMSNVDRKELVFPGLSSGNVNIFSASKGSLVESAKELESHKTAASVTGSVLPEKLPQIDLRRDKRQSDDNVFSSTFSLSRSSPFSMVNSTSSPSSMTSSAPSSNSTFAGSDRKASTTELSGFSPPIVSASGSFAFQTTKPLVFPPTPAQQSSPASDSTKTEPQLSSTVDSEITKQEPTLETKSPIGIVSLKPVPSGLSGAESSSIQKSDSLLSSQELTTSIPNVTSNSQPQQPSGIFSQIRNTTSETVAAEKQLEIPIAQDDSMDEEAPESISTGELNLGSLGGFGISSTTIPTAPKANPFGGSFGNAAIPTMSSPFSMTVPSGELLRPASFNFQSPFSSQSSQSTSSTAFSGGFGSGVAGQSANQGGFGQPSQIGSGLQALGSVLGTFGQSRQLGPTPQGTNSGSSSGFGGGFAGMKPMGGFSNGLASGGGFGGLASGGGGFGALASGGGFSGVGAGGGFQAAGGGFGAFSNTTQGTGGFSAFGSGAGGSGVPPELFTQIRK 1701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8194854 8212770 - Bma011209.1 Bma14g00740 94721

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00740 1701 MobiDBLite consensus disorder prediction 1268 1317 - -
Bma14g00740 1701 MobiDBLite consensus disorder prediction 992 1049 - -
Bma14g00740 1701 MobiDBLite consensus disorder prediction 1394 1412 - -
Bma14g00740 1701 MobiDBLite consensus disorder prediction 1588 1609 - -
Bma14g00740 1701 MobiDBLite consensus disorder prediction 1338 1412 - -
Bma14g00740 1701 MobiDBLite consensus disorder prediction 1338 1380 - -
Bma14g00740 1701 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP214 ISOFORM X1 2 1701 IPR044694 GO:0006405|GO:0017056
Bma14g00740 1701 MobiDBLite consensus disorder prediction 539 559 - -
Bma14g00740 1701 SUPERFAMILY Nucleoporin domain 9 412 - -
Bma14g00740 1701 MobiDBLite consensus disorder prediction 1179 1197 - -
Bma14g00740 1701 MobiDBLite consensus disorder prediction 1255 1317 - -
Bma14g00740 1701 MobiDBLite consensus disorder prediction 997 1019 - -
Bma14g00740 1701 MobiDBLite consensus disorder prediction 1122 1171 - -
Bma14g00740 1701 MobiDBLite consensus disorder prediction 1022 1049 - -
Bma14g00740 1701 MobiDBLite consensus disorder prediction 1588 1608 - -
Bma14g00740 1701 MobiDBLite consensus disorder prediction 1115 1200 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00740 K14317 NUP214, CAN; nuclear pore complex protein Nup214 - jre:109003767 1103.97
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g9 . . . . . . Bma14g00740 . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag0376 . . . . . . . . . Bda07g00774 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009649 1 2 1 1 0 1 1 0 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma14g00740 Bma_Chr14 FPKM 38.091892 36.600101 33.612881 34.385445 29.488237 31.068998 28.771261 28.76803 29.953295 30.712294