Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00879 ATAAAGGGGAGGAGAGGGAGAATGAAGGAGAGTGGGAGGAAACAGGGAGCAGCGTCGCCATGCGCAGCGTGTAAGTTGCTGAGAAGAAGGTGCGGAGAAGAGTGCGTGTTTGCTCCGTATTTTCCGGCTGATCAACCCCACAAGTTTGCTTCTGTTCACAAGGTCTTTGGGGCAAGCAATGTCAACAAGATGTTGCAGGAGTTGCCAATGCATCAACGAGGTGATGCTGTGAGTAGCTTGGTGTACGAGGCCAATGCGAGAGTGAGAGATCCGGTCTATGGCTGTGCCGGGGCCATCTCTTCTCTGCAACAACAAATCGATCTTCTTCAAACCCAGCTCGCGTTGGCTCAGGCCGAGGTGGTGCACCTCCGGATGCGCCAGGGTGCGCCGCCGTTTTCTTGCCACAGTGCGAGCCCGACAAGCCCGAGTAATAGCGGTTCGCCTTCTTCTAGGCTCTTGGGTTCCCATGCCAAGCCCATTTTTGAAATGGACTTGATTGTGGATCATTCCAACGCCATGAGTGATTCTATTTGGTAA 537 53.45 IKGRRGRMKESGRKQGAASPCAACKLLRRRCGEECVFAPYFPADQPHKFASVHKVFGASNVNKMLQELPMHQRGDAVSSLVYEANARVRDPVYGCAGAISSLQQQIDLLQTQLALAQAEVVHLRMRQGAPPFSCHSASPTSPSNSGSPSSRLLGSHAKPIFEMDLIVDHSNAMSDSIW 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9901680 9902806 + Bma011363.1 Bma14g00879 94860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00879 178 Pfam Lateral organ boundaries (LOB) domain 20 117 IPR004883 -
Bma14g00879 178 MobiDBLite consensus disorder prediction 133 152 - -
Bma14g00879 178 Coils Coil 99 126 - -
Bma14g00879 178 ProSiteProfiles LOB domain profile. 19 120 IPR004883 -
Bma14g00879 178 MobiDBLite consensus disorder prediction 131 153 - -
Bma14g00879 178 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 171 - -
Bma14g00879 178 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 8 171 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00230 Bma-Chr3:1749341 Bma14g00879 Bma-Chr14:9901680 8.42E-60 dispersed
Bma03g00702 Bma-Chr3:6241374 Bma14g00879 Bma-Chr14:9901680 9.26E-23 dispersed
Bma08g01029 Bma-Chr8:49439546 Bma14g00879 Bma-Chr14:9901680 1.20E-60 dispersed
Bma08g01069 Bma-Chr8:49714152 Bma14g00879 Bma-Chr14:9901680 6.03E-46 dispersed
Bma10g00422 Bma-Chr10:4424258 Bma14g00879 Bma-Chr14:9901680 3.79E-39 dispersed
Bma13g00845 Bma-Chr13:36303614 Bma14g00879 Bma-Chr14:9901680 2.92E-39 dispersed
Bma14g00470 Bma-Chr14:5340036 Bma14g00879 Bma-Chr14:9901680 4.97E-47 dispersed
Bma01g01587 Bma-Chr1:40187920 Bma14g00879 Bma-Chr14:9901680 4.53E-93 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58348 PF03195 LOB 9.50E-43 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00879 - - twl:120014532 247.284