Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00963 ATGAGGCCTCGTAACAGTAAGGCGACCTCCGTTACCGACAGAAACAAAACCATTGCTCAGTATAACGCAGACGCTCGGCTTTTGGCTGATTTTGAGAAGTCTACCGAGCCTGGTGAGTCTTTTAACTACTCAAGATCAGTTTTGCAGAGTTGTCAATCTGTGCCCGAAGAACAAATTACTGCTTATTTATCGATAATCCAAAGGGGTGGTCTAATTCAGCCATTTGGTTGCATGATCGCTGTTGAAGAAACCAGTCTAAAAATTATCGGTTATAGTGAGAATTGCTCTGATCTATTGGGTTTAAAGTCTCAATTAGAGTTAACACAGGCAAAGAGTCTGATTGGGATTGATGTTAGAACACTTTTTACTCCTTCATCAAGTACTTCTTTAGCGAACGCTGCCGCGTCCTGGGAGATTTCGTTTCTAAACCCGATATGGGTTTATTCTAAGACATCCCAGAATCCATTTTATGCAATATTGCATAGAATTGACGTGGGAATTGTGATCGATTTGGAGCCTGCAAAGTCGGGTGATCCTGCTTTATCACTTGCAGGGGCAGTTCAGTCTCAGAAACTAGCTGTTCATGCAATTTCTAGACTGCAATCTCTCCCTGGAGGTGATATTGGTGCTTTATGTGACACTGTTTTGGAAGATGTTCAGAAGATTACTGGATATGACAGGGTGATGGCCTACAAATTCCACGATGATGATCATGGCGAGGTTGTTTCAGAGCTTAGAAGATCAGACTTAGAGCCTTACCTTGGTTTGCATTATCCTTCCACAGATATTCCCCAAGCTGCTCGTTTTCTGTTCAAGCAGAACAAAATCCGAATGATCTGCGATTGCAATGCAAAACCCATTAAGATCATTCAAAGTGAGAAGCTAAAACAGTCTTTATGCTTAGTCAATTCAACTCTTCGATCACCTTATGGTTGTCATTCTCAATATATGATCAACATGGGCTCTATTGGGTCACTAGTAATGGCTGTCCTCGTAAGTAGTAACAATGGGACAAAGCTTTGGGGGCTCGTGGTTTGCCACCACACTTCTCCCCGCTACCTCCCCTTCCCTCGTCGTTATGCTTGCGAGTTACTTATGCAGGCATTTGGGCTGCAGCTCTACATGGAGTTTCAATTGGCATCACAGTTAATGGAAAAGAACATTCTCAAAACTCAAACCTTAATCTCATACATGCTTCTCCAAGACGGTCCTTACAGTCTAGTGACTCAATCTCCAAGTATTATGGATCTCGTGAAATGTGACGGAGCTGCATTGTACTACAATGGAACATGTTGGCTTTTGGGCGTGACACCATCCGAATCGCAAGTAATGGATATTGCAGAGTGGCTTCTTAATGATCATCAGGATTCTACCGGGTTGAGTACAGATACTTTAGCGGATTCTGGCTATCCCGGCGCTGCTTCACTGGGAGATGCAGTGTGTGGCATGGTAGCCGCGAGAATCAACTCAAAGGATTTCTTATTCTGGTTCAGATCTCGTGCAGCGAAAGAAGTGAAATGGGCCGGAGCAAAGCATCATCCTGAAGATAAGGACGATGGTGGAAAATTGCACCCAAGATCGTCTTTCAATGCCTTTCTCGAAGTCATCAAAAATAGAAGTTTTCCTTGGGAGGTTTCGGAAATTAACGCCATTCACACTCTGCAACTTATAATGAGAGATTCATTGCAGAACTTCAAAGACACAAGTACAAAAGGCCTAATTACTGCACAGCTGAGTGGTTCTGAGATGCAGAGGGTAGATGAACTTAGTTCAGCTGTGTGGGAAATGCTTAGATTGATCGAGACAGCCACAGTTCCCATTTTTGGGGTTGATTCAGCTGGTCTAATCAATGGATGGAATGCTAAAATTTCTGAACTGACTGGATTAGAATCTAGTAACGCCATGGGAAAATCTTTGGTGGGTGAGGTTACTCATGAGGATTCGCGTCAAACGGTTGGAAGCGTCCTCGGTCGTGCTTTGAAAGGCGAAGAAGAAAGAGATGTTGAGTTGAAACTGAGAACTTTTACACCCGATAGAAGAGAACCTGCCTTGTATATTGTGGTCAATTCCTGCACAAGCCGGGACTATAAGAACCAAGTCATTGGCGTTTGCTTCGTAGGTCAAGATATTACATCGGAGAAAATCGTAATGGATAAATTTATTCAACTACAAGGTGATTACAAGGCTATAATTCATAGTCTCAACCCCTTTTTTCCACCCATATTTGCCTCTGATGTGAATGCTTGCTGCTCTGAGTGGAATGCAGCCATGGAAAAACTGACTGGTTGGAAAAGAGATGAAGTTATAGGAAAAATTCTACCCGGAGAAGTTTTTGGAACGTTCTGTCGATTGAAAGGCCAAGATACGTTGACCAAGTTTATGATTTCACTTTACAGAAGCATTCTTGGTCAAGAAACTGAGGAGCTTCCATTTGGATTTTTCAATCGAAAAGGAATATTTGTGAAGGTGCTCTTAACGGCAAACAAGAGGACGGATGGAGCTGGAGATATCATCGGCTGTTTCTGCTTCTTGCAGATTGCTGAGCATGTTGCTGAAGAACACGTGGAAGAGGAGGGAGAGAGCTTTTTGCAATTGACGGAGTTAGCGTATATTCGGCAGGAGATAAACAATCCGTTGAACGGTATTAGATTTATCCACGAGCTTCTCCAGAGTAGCTGCATCGAAGAAAAGCAGAAACAATTTCTTAATACCTGTCATGCATGTGAGAGACAGATCATGATGATCATGGAGGACAAGAATTTGAGAACCATAGAAGGAGGAAGTATAGAGCTAAACGTTGAAGAATTTCTGCTGGGGGATGTTTTACATGCCATTATCGGTCAAATCATGAACCTCGTGAGGAAGAAGCAGCTACAGCTTCAACACGAAATCCGGGAAGATATCGAGTCATTAATCCTTTATGGCGATCAAATTAAGTTACAGCTAGTTCTGTCCGATATTTTGCTCAATGTGGTGAATTACGCACCTTCTCCCGATGGGTTGGTCGAAATCAACATCTCAACTCGTTTAATATCGATTGAAGATGGCCAAAACAAGATCCACTTGCAGGTCAGAATGACACACCCTGGTGAAGGTCTGCCATCAACGTTGGTCCAAGAAATGTTTGGAGAAGGAGAGCAATGCACTTCACATGAAGGTCTTGGGCTAAACCTCTCAAGAGAACTTCTGAGCAAGATGAATGGAAATGTTCATTATGTTAGAGAACACAATAAATGCTATTTCCTCGTCGATCTCGAGCTTCAAATGAAGAGAGATATACCCGAAGAGCCTAAAGCTGAAGCGATAGATCGAATCATACCCTCATGA 3327 42.8 MRPRNSKATSVTDRNKTIAQYNADARLLADFEKSTEPGESFNYSRSVLQSCQSVPEEQITAYLSIIQRGGLIQPFGCMIAVEETSLKIIGYSENCSDLLGLKSQLELTQAKSLIGIDVRTLFTPSSSTSLANAAASWEISFLNPIWVYSKTSQNPFYAILHRIDVGIVIDLEPAKSGDPALSLAGAVQSQKLAVHAISRLQSLPGGDIGALCDTVLEDVQKITGYDRVMAYKFHDDDHGEVVSELRRSDLEPYLGLHYPSTDIPQAARFLFKQNKIRMICDCNAKPIKIIQSEKLKQSLCLVNSTLRSPYGCHSQYMINMGSIGSLVMAVLVSSNNGTKLWGLVVCHHTSPRYLPFPRRYACELLMQAFGLQLYMEFQLASQLMEKNILKTQTLISYMLLQDGPYSLVTQSPSIMDLVKCDGAALYYNGTCWLLGVTPSESQVMDIAEWLLNDHQDSTGLSTDTLADSGYPGAASLGDAVCGMVAARINSKDFLFWFRSRAAKEVKWAGAKHHPEDKDDGGKLHPRSSFNAFLEVIKNRSFPWEVSEINAIHTLQLIMRDSLQNFKDTSTKGLITAQLSGSEMQRVDELSSAVWEMLRLIETATVPIFGVDSAGLINGWNAKISELTGLESSNAMGKSLVGEVTHEDSRQTVGSVLGRALKGEEERDVELKLRTFTPDRREPALYIVVNSCTSRDYKNQVIGVCFVGQDITSEKIVMDKFIQLQGDYKAIIHSLNPFFPPIFASDVNACCSEWNAAMEKLTGWKRDEVIGKILPGEVFGTFCRLKGQDTLTKFMISLYRSILGQETEELPFGFFNRKGIFVKVLLTANKRTDGAGDIIGCFCFLQIAEHVAEEHVEEEGESFLQLTELAYIRQEINNPLNGIRFIHELLQSSCIEEKQKQFLNTCHACERQIMMIMEDKNLRTIEGGSIELNVEEFLLGDVLHAIIGQIMNLVRKKQLQLQHEIREDIESLILYGDQIKLQLVLSDILLNVVNYAPSPDGLVEINISTRLISIEDGQNKIHLQVRMTHPGEGLPSTLVQEMFGEGEQCTSHEGLGLNLSRELLSKMNGNVHYVREHNKCYFLVDLELQMKRDIPEEPKAEAIDRIIPS 1108
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10979022 10983760 - Bma011456.1 Bma14g00963 94944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00963 1108 Pfam PAS fold 596 710 IPR013767 GO:0006355
Bma14g00963 1108 Pfam PAS fold 726 845 IPR013767 GO:0006355
Bma14g00963 1108 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 207 367 IPR016132 -
Bma14g00963 1108 PANTHER TWO-COMPONENT HISTIDINE KINASE 14 1093 - -
Bma14g00963 1108 CDD HisKA 868 918 IPR003661 GO:0000155|GO:0007165
Bma14g00963 1108 CDD PAS 603 710 IPR000014 -
Bma14g00963 1108 SMART pas_2 594 661 IPR000014 -
Bma14g00963 1108 SMART pas_2 725 795 IPR000014 -
Bma14g00963 1108 ProSiteProfiles Histidine kinase domain profile. 870 1089 IPR005467 -
Bma14g00963 1108 Gene3D - 926 1093 IPR036890 -
Bma14g00963 1108 CDD PAS 740 845 IPR000014 -
Bma14g00963 1108 SUPERFAMILY PYP-like sensor domain (PAS domain) 740 844 IPR035965 -
Bma14g00963 1108 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 930 1079 IPR036890 -
Bma14g00963 1108 SMART HKATPase_4 975 1089 IPR003594 -
Bma14g00963 1108 Gene3D PAS domain 66 310 - -
Bma14g00963 1108 TIGRFAM sensory_box: PAS domain S-box protein 599 714 IPR000014 -
Bma14g00963 1108 Gene3D - 188 538 IPR029016 -
Bma14g00963 1108 PRINTS Phytochrome signature 688 705 IPR001294 GO:0006355|GO:0009584
Bma14g00963 1108 PRINTS Phytochrome signature 222 241 IPR001294 GO:0006355|GO:0009584
Bma14g00963 1108 PRINTS Phytochrome signature 407 427 IPR001294 GO:0006355|GO:0009584
Bma14g00963 1108 PRINTS Phytochrome signature 492 511 IPR001294 GO:0006355|GO:0009584
Bma14g00963 1108 PRINTS Phytochrome signature 614 629 IPR001294 GO:0006355|GO:0009584
Bma14g00963 1108 PRINTS Phytochrome signature 122 144 IPR001294 GO:0006355|GO:0009584
Bma14g00963 1108 PRINTS Phytochrome signature 595 611 IPR001294 GO:0006355|GO:0009584
Bma14g00963 1108 PRINTS Phytochrome signature 307 328 IPR001294 GO:0006355|GO:0009584
Bma14g00963 1108 PRINTS Phytochrome signature 525 543 IPR001294 GO:0006355|GO:0009584
Bma14g00963 1108 PRINTS Phytochrome signature 708 728 IPR001294 GO:0006355|GO:0009584
Bma14g00963 1108 ProSiteProfiles PAS repeat profile. 595 663 IPR000014 -
Bma14g00963 1108 Pfam Phytochrome region 394 564 IPR013515 GO:0006355|GO:0009584
Bma14g00963 1108 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 975 1084 IPR003594 -
Bma14g00963 1108 ProSiteProfiles PAC domain profile. 666 722 IPR000700 -
Bma14g00963 1108 SUPERFAMILY GAF domain-like 187 373 - -
Bma14g00963 1108 Gene3D PAS domain 739 854 - -
Bma14g00963 1108 PIRSF Phytochrome_conventional 1 1097 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Bma14g00963 1108 PANTHER PHYTOCHROME E 14 1093 - -
Bma14g00963 1108 Pfam PAS fold 61 174 IPR013654 GO:0006355
Bma14g00963 1108 SUPERFAMILY GAF domain-like 385 563 - -
Bma14g00963 1108 SUPERFAMILY PYP-like sensor domain (PAS domain) 598 706 IPR035965 -
Bma14g00963 1108 Gene3D - 382 555 IPR043150 -
Bma14g00963 1108 SMART gaf_1 207 387 IPR003018 GO:0005515
Bma14g00963 1108 Gene3D PAS domain 593 714 - -
Bma14g00963 1108 Pfam GAF domain 207 376 IPR003018 GO:0005515
Bma14g00963 1108 SUPERFAMILY PYP-like sensor domain (PAS domain) 66 177 IPR035965 -
Bma14g00963 1108 SMART HisKA_10 863 927 IPR003661 GO:0000155|GO:0007165
Bma14g00963 1108 Pfam His Kinase A (phospho-acceptor) domain 868 925 IPR003661 GO:0000155|GO:0007165
Bma14g00963 1108 ProSiteProfiles PAS repeat profile. 726 771 IPR000014 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g01487 Bma14g00963 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00993 Bma-Chr5:48415383 Bma14g00963 Bma-Chr14:10979022 0 dispersed
Bma06g01466 Bma-Chr6:51314368 Bma14g00963 Bma-Chr14:10979022 0 dispersed
Bma12g00850 Bma-Chr12:39312161 Bma14g00963 Bma-Chr14:10979022 0 dispersed
Bma14g00963 Bma-Chr14:10979022 Bma14g01923 Bma-Chr14:41020093 8.85E-07 dispersed
Bma01g01487 Bma-Chr1:28734629 Bma14g00963 Bma-Chr14:10979022 0 wgd
Bma01g01487 Bma-Chr1:28734629 Bma14g00963 Bma-Chr14:10979022 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00963 K12123 - tcc:18596568 1566.98