Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g00979 ATGGCTACTGCGGCAATATTCTCGTCGTTGCGGCGGCGAAGATCGCCGTCTTTAGAGGTTTTGTTAGCTCCGGTCGACCTCAATGATGTAGCGCTTGTACAGACGCTTGCTTCGGTCGCTGCCGATCTTGTTTCGTGTTTTATACAGAAATCGTTCTTCTTTCAGCGCAAAAATTCGAGGTCTCTGATACGGAAAGTGGACGTTTTTCTCGTGTTCTTGCAGTATCTGAAGGACTCCGGCGCGAGTTTGCCTGCCACGGCAGTGATTTGCTTCAAAGAGCTTTACTTGTTACTGTATCGATCGAAGATCCTCCTCGATTATTGCTCTCAATCGCGTAAGTTGTGGCTACTGCTTCAAAATCATCCTATTGCATTGCATTTCCACGATTTAAACCTGGAAATTTTGACCATTCTGGACGTGTTTCCGTTTGATGAAGTTAAATTGGATATAGACATTAGAGAGCAGATTAAGCTATTACAGAACCAACTGAGAAGGGGGAAATTGTACATAGAGAAGCAAGATGAGGTGCTGCGAATTCAGTTTCTTTCGTTTCTCCATGATTTTGAGAATGGAAAGACTCCGGATTCTGGGAAAATGAAAGAGTTCTTCGTCGAAAGATTGGAGATAAAGACTGCAAACAATTGCATAGCTGAAATTGAGCATTTGGAAGAGCAGATTGTGAATCATGATGGAGATATCGAGCCAACAATATCGGTTCTTAGCGGATTTGTTGCACTTACGAGATATAGTAGATTTTTGCTGTTCGGGTTTCACGGAGAGGAATTAGAATCAAGCTATAGAAATCAGAAGATGAGAAATAGATTGATTAAGCAAGAAACTGCAGAAACTCTCGTAACAATCCCAAAGGATTTTTGCTGTCCAATCTCACTGGAATTGATGACAGACCCAGTGATTATAGCAACAGGACAGACATATGATCGTTGTTCAATAGCTCGGTGGATTGAAGAAGGGCATTGTAATTGTCCGAAAACGGGGCAAATGCTTGTCCACAATAATCTTGTTCCAAATCGAGCTTTGAGGAATTTGATCATTCAGTGGTGCTCTGCCCATGGAGTTGCTTATGATCCACCAGAAGGCATGGATTCTTCTGCAGAAAAGCTTGCTGCAGCTTCCTCCTATAGAGCTGCAGTGGAGGCCAACCGAGCAACAACTCAGCTTCTGATCCAACAGCTTGCAAATGGGTCACAAGAGGGGAAGACCATAGCTGTGCAAGAAATACGATTATTGGCAAAAACTGGAAAGGAAAACCGTGCCTTCATAGCAGAAGCCGGGGCCATTCCCCATCTTCTAAATCTGCTTTCTTCTCCAAACCATGTTGCTCAAGAGAATTCAATCACTGCGATGCTTAATCTTTCGATCTACGACAAGAACAAGAGTCAAATCATGGAGGAAGAAGGGTGTTTAAGATCGATAGTAGGGGTTCTGAAGTCGGGAAAAACGACAGAAGCAAGAGAAAATGCGGCAGCTACGTTGTTTAGCCTTTCAGCCGTCCATAACTACAAGAAAATAATAGCCAACGAGGAGGGGGCTGTAGAGTGCTTAGCAGGGCTGCTAAAAGTGGGAACAACGAGAGGGAAAAAAGATGCAGTGACGGCCTTGTTTAATCTTTCAACTCATGCTGAAAATGGTGCAAAATTAATTTCGGCAGGTGCAGTGAAAGCACTAGTTGGCGCATTGACGAACGATGGGGTGGCAGAGGAAGCAGCAGGAGCTTTAGCCTTGATTGTTCGTCAACCCATCGGAGCCCAGGCCGTGGGGGAAGAGGAATTATCGGTAACTGGGTTGATATCAATGATGAGAGGTGGAACGGCAAGAGGGAAAGAGAATGCAGTGGCAGCTCTGCTTGAGCTTTGTCGGACTGGCGGAGCAGCTGCAACTGAGAGGGTGGCAAGAGCTCCGGCTTTAGCCGGTTTGCTCCAAACCCTCTTGTTTACCGGCACAAAACGGGCTCGGAGAAAGGCGGCTTCTCTTGCAAGAATGTTTCAAAGGTGTGAAAATATCACCTTGCATTATAGCGAATTGGGGGTTGGATATGCATTTTCGAGCAATTCAGCTGCAGGGAGAGAGTCGAGCATCATCGGAGATATGTCGGCTGTGTCGATACCCATTTCAGTGCCGGTTTTGTAG 2148 45.39 MATAAIFSSLRRRRSPSLEVLLAPVDLNDVALVQTLASVAADLVSCFIQKSFFFQRKNSRSLIRKVDVFLVFLQYLKDSGASLPATAVICFKELYLLLYRSKILLDYCSQSRKLWLLLQNHPIALHFHDLNLEILTILDVFPFDEVKLDIDIREQIKLLQNQLRRGKLYIEKQDEVLRIQFLSFLHDFENGKTPDSGKMKEFFVERLEIKTANNCIAEIEHLEEQIVNHDGDIEPTISVLSGFVALTRYSRFLLFGFHGEELESSYRNQKMRNRLIKQETAETLVTIPKDFCCPISLELMTDPVIIATGQTYDRCSIARWIEEGHCNCPKTGQMLVHNNLVPNRALRNLIIQWCSAHGVAYDPPEGMDSSAEKLAAASSYRAAVEANRATTQLLIQQLANGSQEGKTIAVQEIRLLAKTGKENRAFIAEAGAIPHLLNLLSSPNHVAQENSITAMLNLSIYDKNKSQIMEEEGCLRSIVGVLKSGKTTEARENAAATLFSLSAVHNYKKIIANEEGAVECLAGLLKVGTTRGKKDAVTALFNLSTHAENGAKLISAGAVKALVGALTNDGVAEEAAGALALIVRQPIGAQAVGEEELSVTGLISMMRGGTARGKENAVAALLELCRTGGAAATERVARAPALAGLLQTLLFTGTKRARRKAASLARMFQRCENITLHYSELGVGYAFSSNSAAGRESSIIGDMSAVSIPISVPVL 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11398426 11400573 - Bma011472.1 Bma14g00979 94960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g00979 715 PANTHER U BOX DOMAIN-CONTAINING 12 693 - -
Bma14g00979 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 360 IPR013083 -
Bma14g00979 715 SUPERFAMILY ARM repeat 391 669 IPR016024 -
Bma14g00979 715 Pfam U-box domain 287 357 IPR003613 GO:0004842|GO:0016567
Bma14g00979 715 CDD RING-Ubox_PUB 291 333 IPR045210 -
Bma14g00979 715 SMART arm_5 462 503 IPR000225 GO:0005515
Bma14g00979 715 SMART arm_5 546 584 IPR000225 GO:0005515
Bma14g00979 715 SMART arm_5 420 460 IPR000225 GO:0005515
Bma14g00979 715 SMART arm_5 505 545 IPR000225 GO:0005515
Bma14g00979 715 ProSiteProfiles U-box domain profile. 286 360 IPR003613 GO:0004842|GO:0016567
Bma14g00979 715 Gene3D - 367 547 IPR011989 -
Bma14g00979 715 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 12 693 - -
Bma14g00979 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 431 473 IPR000225 GO:0005515
Bma14g00979 715 Pfam Armadillo/beta-catenin-like repeat 421 459 IPR000225 GO:0005515
Bma14g00979 715 Gene3D - 552 676 IPR011989 -
Bma14g00979 715 SMART Ubox_2 290 353 IPR003613 GO:0004842|GO:0016567
Bma14g00979 715 SUPERFAMILY RING/U-box 276 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01714 Bma-Chr1:53690536 Bma14g00979 Bma-Chr14:11398426 3.74E-138 dispersed
Bma14g00979 Bma-Chr14:11398426 Bma15g00190 Bma-Chr15:1948368 4.19E-87 dispersed
Bma14g00979 Bma-Chr14:11398426 Bma11g00122 Bma-Chr11:1154400 2.25E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g00979 - - jre:108979603 982.63