Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01058 ATGGGTAGGGGAAGAGTGGAGATGAAGAGAATAGAGAACAAAATAAACAGGCAGGTTACTTTTGCAAAGAGGAGAAATGGGGTTTTGAAGAAAGCTTATGAGCTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTCATCGTCTTCTCCAGCCGTGGAAAACTCTATGAGTTTTGCAGTACCTCTAACATGCTCAAAACGTTGGAGAGGTACCAAAAATGTAGCTATGGGGCAGTGGAAGTCACCAAACCCGACAAAGAGCTCGAGCAGAGTAGCTACAGAGAATACATGAAACTCAAAGCTAAGCTTGAGTCTCTGCAAAGAACTCAAAGAAAAGTTTTCTACGTAAATCTCGATGTTAAGTTTCTGTGTATTTTTTTTTTTTTCATTTCGCATTCGATCTTCAACAATAATTACTCAAAATACTATTTGGATACAGCATTTCCAACTGTCATTGGTTTTGGTATAATTGTTTGTTTTTTTTTTTGCTTTTGGTACCTTAGAAACATTCTTGGAGATGATTTAGATCCACTGAATTCAAATGAGCTTGAGCAGCTTCAATGTCAACTAGAGGCATCCCTCATGCAAGTTAGGTCAACAAGGACACAGACCATGCTTGACCAGCTTTCAGACCTTCAAAACAAGGTACAATATTTGCTTCGACTAGCAATCAATATAATTTTTGTCAATCAGCTGGATGAGATTAGTTCTAGAAACCATCCGAGGCAGCCATGGGAGGGTGGTGGGGAATGCATTTCATATGCTCCTCAAAATGTTGAGTCTCAGGTCTTCTTCCAGCCTCTAGACTGCAATCCCGCTTTGCAAATTGGCTATACAGGTTCAGTTCCAGACCAGATCACTGCTACCACCATCGTTACAACCTCTCATCCCCATCAACTCAATGCATTCATTCCAGGTTGGATGCTTTGA 927 40.67 MGRGRVEMKRIENKINRQVTFAKRRNGVLKKAYELSVLCDAEVALIVFSSRGKLYEFCSTSNMLKTLERYQKCSYGAVEVTKPDKELEQSSYREYMKLKAKLESLQRTQRKVFYVNLDVKFLCIFFFFISHSIFNNNYSKYYLDTAFPTVIGFGIIVCFFFCFWYLRNILGDDLDPLNSNELEQLQCQLEASLMQVRSTRTQTMLDQLSDLQNKVQYLLRLAINIIFVNQLDEISSRNHPRQPWEGGGECISYAPQNVESQVFFQPLDCNPALQIGYTGSVPDQITATTIVTTSHPHQLNAFIPGWML 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12791783 12798670 + Bma011563.2 Bma14g01058 95039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01058 308 ProSiteProfiles K-box domain profile. 88 237 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma14g01058 308 Coils Coil 182 202 - -
Bma14g01058 308 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Bma14g01058 308 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Bma14g01058 308 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 114 - -
Bma14g01058 308 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 167 290 - -
Bma14g01058 308 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bma14g01058 308 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bma14g01058 308 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma14g01058 308 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma14g01058 308 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bma14g01058 308 Pfam K-box region 166 218 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma14g01058 308 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Bma14g01058 308 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 114 - -
Bma14g01058 308 PANTHER SERUM RESPONSE FACTOR HOMOLOG 167 290 - -
Bma14g01058 308 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bma14g01058 308 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01341 Bma-Chr6:50356222 Bma14g01058 Bma-Chr14:12791783 4.16E-73 dispersed
Bma14g01058 Bma-Chr14:12791783 Bma04g00845 Bma-Chr4:10563643 8.90E-22 dispersed
Bma01g01093 Bma-Chr1:11526000 Bma14g01058 Bma-Chr14:12791783 4.09E-82 wgd
Bma14g01058 Bma-Chr14:12791783 Bma02g00452 Bma-Chr2:6954226 9.09E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58357 PF01486 K-box 2.90E-13 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01058 K09264 - jre:108988112 307.76