Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma14g01059 | ATGTATCATTCTCCTCCATTTCCACTGCCTTATGATGCTGACCCAAGATATATCCGCCTGCAATGTGATAGGCTAGTTTTGACCCGTGAAAAGGGCTCGAGCCATTTGCACGGAGAATTGGAGCCTCTGAGAAGTGATATTGATATGGATATGGCTTTGAGGGCTGCTGACAAGTTGAATAGATCTACTGGTGAAGATGAATCTACAGACGAGTTGAGGAAGTTCTTGTTAAAATATTCTTCTGCGAAAAAATCCACTGCAGTTGAGAAAAATTATGCATTTTCGGAAGACGAGGATGTCTGTCCTACGTGTCTTGAAGAATATACTCCTGAAAATCCCAAGATTATGACCAAATGCTCTCATGATTTTCATCTTGGATGCATATATGAGTGGATGGAGAGAAGTGAAAGCTGCCCAGTTTGTGGGGAGGTATCATTCTTTATCCACCCTCTTTACTAG | 459 | 41.83 | MYHSPPFPLPYDADPRYIRLQCDRLVLTREKGSSHLHGELEPLRSDIDMDMALRAADKLNRSTGEDESTDELRKFLLKYSSAKKSTAVEKNYAFSEDEDVCPTCLEEYTPENPKIMTKCSHDFHLGCIYEWMERSESCPVCGEVSFFIHPLY | 152 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 12803159 | 12803946 | - | Bma011564.1 | Bma14g01059 | 95040 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma14g01059 | 152 | ProSiteProfiles | Zinc finger RING-type profile. | 101 | 141 | IPR001841 | - | |
| Bma14g01059 | 152 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 1 | 147 | - | - | |
| Bma14g01059 | 152 | SUPERFAMILY | RING/U-box | 93 | 148 | - | - | |
| Bma14g01059 | 152 | SMART | ring_2 | 101 | 141 | IPR001841 | - | |
| Bma14g01059 | 152 | Pfam | RING-H2 zinc finger domain | 98 | 141 | IPR024766 | GO:0008270 | |
| Bma14g01059 | 152 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 54 | 145 | IPR013083 | - | |
| Bma14g01059 | 152 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 147 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma01g01081 | Bma-Chr1:11397018 | Bma14g01059 | Bma-Chr14:12803159 | 8.05E-64 | dispersed | |
| Bma06g01322 | Bma-Chr6:50195810 | Bma14g01059 | Bma-Chr14:12803159 | 4.66E-33 | dispersed | |
| Bma14g00703 | Bma-Chr14:7670777 | Bma14g01059 | Bma-Chr14:12803159 | 1.57E-19 | dispersed | |
| Bma14g01059 | Bma-Chr14:12803159 | Bma02g01189 | Bma-Chr2:54008504 | 1.30E-09 | dispersed | |
| Bma01g01095 | Bma-Chr1:11534859 | Bma14g01059 | Bma-Chr14:12803159 | 4.52E-64 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma14g01059 | - | - | zju:107416681 | 203.756 |