Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01168 GGAGCTTGTGGTTACGGCGATCTGTTCAAACAAGGCTATGGGCTAGAAACAACAGCACTGAGCTCTGCTCTGTTCAACAACGGAAAGACTTGCGGTGCATGCTACGAGTTACAATGCGTAGACTCACAATATTGTAAATCCGGCTCCATCAAAGTCACAGCCACCAATTACTGCCCACCCTCGGACCATCCATCTGGAAATTGGTGCAACGCGCCGCAAAAACACTTTGATTTGACTGAGCCGATGTTCTTAAAGATCGCTGAATACAAAGCCGGCATCGTCCCGATCCAATTCCGGAAAAGTCCCTGCGCGAAGAGCGGAGGTATCAAATTCGAGATCAACGGAAACCCTAATTTTCTGCTCGTTTTGGTTTTCAACGTCGGAGGTGCCGGCGACGTTGTTGACGTGAAAGTCAAGGGATCCAACACCAACTGGTTGCAGATGAACCGTAATTGGGGCGACAAGTGGGACAACGGCACACCATTGGTAGGGCAGAGCTTGTCGTTCCGGGTGACTACTAGCGACGGGAGGTCGGTGGAATGCGACAATGTCGCTCCGGCTAGTTGGCAATACGGCCAGACCTATGAATCAAGTACCAATTTCTAG 606 50.66 GACGYGDLFKQGYGLETTALSSALFNNGKTCGACYELQCVDSQYCKSGSIKVTATNYCPPSDHPSGNWCNAPQKHFDLTEPMFLKIAEYKAGIVPIQFRKSPCAKSGGIKFEINGNPNFLLVLVFNVGGAGDVVDVKVKGSNTNWLQMNRNWGDKWDNGTPLVGQSLSFRVTTSDGRSVECDNVAPASWQYGQTYESSTNF 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 17053252 17053857 + Bma011716.1 Bma14g01168 95149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01168 201 SMART dpbb_1 17 98 IPR007112 -
Bma14g01168 201 Gene3D - 107 201 IPR036749 -
Bma14g01168 201 SUPERFAMILY Barwin-like endoglucanases 1 126 IPR036908 -
Bma14g01168 201 Pfam Expansin C-terminal domain 109 186 IPR007117 -
Bma14g01168 201 Gene3D - 1 104 IPR036908 -
Bma14g01168 201 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1 108 IPR007112 -
Bma14g01168 201 Pfam Lytic transglycolase 17 98 IPR009009 -
Bma14g01168 201 SUPERFAMILY PHL pollen allergen 105 197 IPR036749 -
Bma14g01168 201 PANTHER EXPANSIN-A21-RELATED 1 201 - -
Bma14g01168 201 PANTHER EXPANSIN-A15 1 201 IPR002963 GO:0009664
Bma14g01168 201 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 118 197 IPR007117 -
Bma14g01168 201 PRINTS Expansin signature 83 96 IPR002963 GO:0009664
Bma14g01168 201 PRINTS Expansin signature 183 199 IPR002963 GO:0009664
Bma14g01168 201 PRINTS Expansin signature 50 60 IPR002963 GO:0009664
Bma14g01168 201 PRINTS Expansin signature 66 83 IPR002963 GO:0009664
Bma14g01168 201 PRINTS Expansin signature 107 119 IPR002963 GO:0009664
Bma14g01168 201 PRINTS Expansin signature 154 175 IPR002963 GO:0009664
Bma14g01168 201 PRINTS Expansin signature 12 26 IPR002963 GO:0009664
Bma14g01168 201 PRINTS Expansin signature 119 140 IPR002963 GO:0009664
Bma14g01168 201 PRINTS Expansin signature 38 49 IPR002963 GO:0009664
Bma14g01168 201 PRINTS Expansin/Lol pI family signature 91 107 IPR007118 GO:0005576
Bma14g01168 201 PRINTS Expansin/Lol pI family signature 21 39 IPR007118 GO:0005576
Bma14g01168 201 PRINTS Expansin/Lol pI family signature 183 197 IPR007118 GO:0005576
Bma14g01168 201 PRINTS Expansin/Lol pI family signature 145 159 IPR007118 GO:0005576
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01063 Bma-Chr1:11133773 Bma14g01168 Bma-Chr14:17053252 1.41E-58 dispersed
Bma14g01168 Bma-Chr14:17053252 Bma03g00200 Bma-Chr3:1535352 1.01E-88 dispersed
Bma14g01167 Bma-Chr14:16988918 Bma14g01168 Bma-Chr14:17053252 3.64E-86 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01168 - - mnt:112090940 301.597