Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma14g01187 ATGGAGTTCGATTCCGGAATTCCTTTGCCCCGAGCGGCAGTGACGGAAGGGCCGTCCACAGCTCTGTCGCCGTCGTTGAGCGAAGATGCGTTGTGGCAAATGAATTTAAGATCAAGCGAATCAATGGAAACTGGGTCATATCCTGAGCGTCCAGGAGAGGCAGATTGTTCTTATTACATCAGAACCGGCCTATGTAGATTTGGAGCAACTTGCCGTTTTAACCATCCTCCCGACAGAAAGCTGGCAATTGCCACTGCAAGGATGAAGGGGGAATATCCGGAGAGATTTGGGCAGCCGGAATGTCAGGCATATTTGTATATGAATTCTCTTCAGTACTACCTGAAGACGGCAACCTGCAAGTTTGGAGCCACATGCAAGTTTCATCATCCTCGAGACAAGGCCGGGATTGCTGGAAGAGTTTCCTTAAACGTCTTAGGATATCCGCTTCGCCCGAACGAGATCGACTGTGCATATTATTTACGAACCGGACTGTGCAAATTCGGGAGTACCTGCAAATTCCATCACCCTCAGCCGACGAATATGATGGTTTCCTTACATGGGTCTCCTGTTTATCCGGCCATCCAATCTCCGTCTACTAGTCAGCAGTCGTATCAAGGAGGAATTACGAATTGGTCCAGAGCGTCTTTCATTCCGACTCCGAGAGAGCAGGGCCCTTCTAGTTATGCACCAGTTATTCTTCCTCAGGGACTGGTTTCAGTTCAAGGTTGGAATGCATACAGTGGTACTTTGGGATCAGTCTCTGCATCGGAGAATCAGCAGCCATCGGTAGCGAATAGTCAAGTTTACGGAGTTTTACGTCAAAATGAATCTGCTAGTGTAGGATCTGAGGTATCGTTTTCTCCGTTTCGCTCGAGCTCTGTTCCTGTTGGGTACTATGCATTGCAGAGGGACAATGTATTTCCTGAGAGACCTGGCCAGCCCGAGTGTCAGTTTTACATGAAAACCGGTGACTGCAAATTTGGCGTTGTTTGTAGATTCCATCATCCGAGAGAGAGATTAATACCGGCTCCGGATTGTGTTTTGAGCCCCCTCGGCCTTCCCTTGCGTCCGGGGGAACCTTTATGCCTGTTCTATTCTCGATATGGTATCTGCAAGTTTGGCCCGAGCTGCAAATTTGACCACCCGATGGGTATCTTCTCGCACAATCTCTCTGCATCGCAGTCGTCGGATTATCCGGTTCGTCGCTTATTAGTTTCATCACCTGGAGCATCAGGTCTAAATTTGTCACCTGAAGGACTGATCGAAGGAGGCCATACGCAGCCGAGGAGACTTTCACTTTCAGAGACAAGACAGATGTCTTCTAGCAGTGATCGTATCGACCCGGACGGGTGA 1353 49.08 MEFDSGIPLPRAAVTEGPSTALSPSLSEDALWQMNLRSSESMETGSYPERPGEADCSYYIRTGLCRFGATCRFNHPPDRKLAIATARMKGEYPERFGQPECQAYLYMNSLQYYLKTATCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIDCAYYLRTGLCKFGSTCKFHHPQPTNMMVSLHGSPVYPAIQSPSTSQQSYQGGITNWSRASFIPTPREQGPSSYAPVILPQGLVSVQGWNAYSGTLGSVSASENQQPSVANSQVYGVLRQNESASVGSEVSFSPFRSSSVPVGYYALQRDNVFPERPGQPECQFYMKTGDCKFGVVCRFHHPRERLIPAPDCVLSPLGLPLRPGEPLCLFYSRYGICKFGPSCKFDHPMGIFSHNLSASQSSDYPVRRLLVSSPGASGLNLSPEGLIEGGHTQPRRLSLSETRQMSSSSDRIDPDG 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 17621737 17624385 - Bma011747.1 Bma14g01187 95168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma14g01187 450 ProSiteProfiles Zinc finger C3H1-type profile. 95 132 IPR000571 GO:0046872
Bma14g01187 450 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 77 IPR000571 GO:0046872
Bma14g01187 450 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 111 131 IPR000571 GO:0046872
Bma14g01187 450 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 312 337 IPR000571 GO:0046872
Bma14g01187 450 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 358 383 IPR000571 GO:0046872
Bma14g01187 450 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 155 177 IPR000571 GO:0046872
Bma14g01187 450 SUPERFAMILY CCCH zinc finger 359 383 IPR036855 GO:0046872
Bma14g01187 450 ProSiteProfiles Zinc finger C3H1-type profile. 150 178 IPR000571 GO:0046872
Bma14g01187 450 SMART c3hfinal6 150 177 IPR000571 GO:0046872
Bma14g01187 450 SMART c3hfinal6 310 337 IPR000571 GO:0046872
Bma14g01187 450 SMART c3hfinal6 108 131 IPR000571 GO:0046872
Bma14g01187 450 SMART c3hfinal6 356 383 IPR000571 GO:0046872
Bma14g01187 450 SMART c3hfinal6 50 77 IPR000571 GO:0046872
Bma14g01187 450 SUPERFAMILY CCCH zinc finger 54 78 IPR036855 GO:0046872
Bma14g01187 450 MobiDBLite consensus disorder prediction 1 24 - -
Bma14g01187 450 ProSiteProfiles Zinc finger C3H1-type profile. 310 338 IPR000571 GO:0046872
Bma14g01187 450 PANTHER PROTEIN PHOSPHATASE RELATED 12 448 - -
Bma14g01187 450 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 12 448 - -
Bma14g01187 450 MobiDBLite consensus disorder prediction 415 450 - -
Bma14g01187 450 ProSiteProfiles Zinc finger C3H1-type profile. 50 78 IPR000571 GO:0046872
Bma14g01187 450 SUPERFAMILY CCCH zinc finger 314 340 IPR036855 GO:0046872
Bma14g01187 450 ProSiteProfiles Zinc finger C3H1-type profile. 356 384 IPR000571 GO:0046872
Bma14g01187 450 SUPERFAMILY CCCH zinc finger 154 178 IPR036855 GO:0046872
Bma14g01187 450 Gene3D - 308 392 - -
Bma14g01187 450 Gene3D - 111 188 - -
Bma14g01187 450 Gene3D - 28 85 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00756 Bma-Chr3:6898330 Bma14g01187 Bma-Chr14:17621737 7.88E-76 dispersed
Bma06g00242 Bma-Chr6:3239740 Bma14g01187 Bma-Chr14:17621737 1.57E-62 dispersed
Bma10g01052 Bma-Chr10:28823741 Bma14g01187 Bma-Chr14:17621737 1.79E-15 dispersed
Bma13g00044 Bma-Chr13:499466 Bma14g01187 Bma-Chr14:17621737 8.77E-123 dispersed
Bma13g00886 Bma-Chr13:38733740 Bma14g01187 Bma-Chr14:17621737 0 dispersed
Bma13g00323 Bma-Chr13:5812458 Bma14g01187 Bma-Chr14:17621737 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58365 PF00642 zf-CCCH 1.70E-09 CL0537 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma14g01187 - - qsu:112012560 729.169